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Diff for: Cargo.lock

+30-19
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Diff for: Cargo.toml

+30-30
Original file line numberDiff line numberDiff line change
@@ -63,19 +63,19 @@ split-debuginfo = "unpacked"
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# improved.
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[workspace.dependencies]
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align_tools = { path = "../enclone_ranger/align_tools" }
67-
amino = { path = "../enclone_ranger/amino" }
66+
align_tools = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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amino = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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anyhow = "1"
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ansi_escape = { path = "../enclone_ranger/ansi_escape" }
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ansi_escape = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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arboard = "2"
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assert_cmd = "2"
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async-trait = "0.1"
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attohttpc = { version = "0.18", default-features = false, features = ["compress", "tls-rustls"] }
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backtrace = "0.3"
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base64 = "0.13"
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binary_vec_io = { path = "../enclone_ranger/binary_vec_io" }
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binary_vec_io = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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bio = "0.39"
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bio_edit = { path = "../enclone_ranger/bio_edit" }
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bio_edit = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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byteorder = "1"
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bytes = "1"
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chrono = { version = "0.4", default-features = false, features = ["std", "clock"] }
@@ -86,41 +86,41 @@ core-graphics = "0.22"
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crc = "2"
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debruijn = "0.3"
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dirs = "4"
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dna = { path = "../enclone_ranger/dna" }
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dna = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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edit-distance = "2"
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enclone_args = { path = "../enclone_ranger/enclone_args" }
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enclone_core = { path = "../enclone_ranger/enclone_core" }
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enclone_args = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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enclone_core = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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enclone_denovo = { path = "../enclone_denovo" }
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enclone_help = { path = "../enclone_help" }
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enclone = { path = "../enclone_ranger/enclone" }
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enclone_print = { path = "../enclone_ranger/enclone_print" }
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enclone_proto = { path = "../enclone_ranger/enclone_proto" }
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enclone_ranger = { path = "../enclone_ranger/enclone_ranger" }
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enclone = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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enclone_print = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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enclone_proto = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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enclone_ranger = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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enclone_server_proto = { path = "../enclone_server_proto" }
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enclone_stuff = { path = "../enclone_ranger/enclone_stuff" }
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enclone_stuff = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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enclone_tail = { path = "../enclone_tail" }
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enclone_vars = { path = "../enclone_ranger/enclone_vars" }
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enclone_vars = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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enclone_version = { path = "../enclone_version" }
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equiv = { path = "../enclone_ranger/equiv" }
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equiv = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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evalexpr = "7"
106-
expr_tools = { path = "../enclone_ranger/expr_tools" }
107-
fasta_tools = { path = "../enclone_ranger/fasta_tools" }
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expr_tools = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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fasta_tools = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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file-lock = "2"
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flate2 = "1"
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float-ord = "0.3"
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fontdb = "0.7"
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fs_extra = "1"
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git = "https://github.com/10xGenomics/hdf5-rust.git"
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graph_simple = { path = "../enclone_ranger/graph_simple" }
114+
graph_simple = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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hdf5 = { git = "https://github.com/10XGenomics/hdf5-rust.git", branch = "conda_nov2021", features = ["conda"], default-features = false }
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home = "0.5"
117-
hyperbase = { path = "../enclone_ranger/hyperbase" }
117+
hyperbase = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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image = { version = "0.23", features = ["jpeg", "png", "jpeg_rayon"], default-features = false }
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include_dir = { version = "0.6", features = ["search"] }
120-
io_utils = { path = "../enclone_ranger/io_utils" }
120+
io_utils = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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itertools = "0.10"
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jpeg-decoder = "0.2"
123-
kmer_lookup = { path = "../enclone_ranger/kmer_lookup" }
123+
kmer_lookup = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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lazy_static = "1"
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libc = "0.2"
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log = "0.4"
@@ -133,7 +133,7 @@ num-traits = "0.2"
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objc = "0.2"
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pager = "0.16"
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palette = "0.6"
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perf_stats = { path = "../enclone_ranger/perf_stats" }
136+
perf_stats = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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permutation = "0.4"
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petgraph = "0.6"
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plotters = { version = "0.3", default_features = false, features = ["svg_backend", "point_series"] }
@@ -153,12 +153,12 @@ serde = "1"
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serde_derive = "1"
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serde_json = "1"
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sha2 = "0.10"
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stats_utils = { path = "../enclone_ranger/stats_utils" }
156+
stats_utils = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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statrs = "0.15"
158-
stirling_numbers = { path = "../enclone_ranger/stirling_numbers" }
159-
string_utils = { path = "../enclone_ranger/string_utils" }
158+
stirling_numbers = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
159+
string_utils = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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superslice = "1"
161-
tables = { path = "../enclone_ranger/tables" }
161+
tables = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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tar = "0.4"
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thiserror = "1"
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tilde-expand = "0.1"
@@ -170,9 +170,9 @@ tonic-build = { version = "0.6", default-features = false, features = ["transpor
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triple_accel = "0.4"
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users = "0.11"
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usvg = { version = "0.19", features = ["text"] }
173-
vdj_types = { path = "../enclone_ranger/vdj_types" }
174-
vdj_ann = { path = "../enclone_ranger/vdj_ann" }
175-
vdj_ann_ref = { path = "../enclone_ranger/vdj_ann_ref" }
176-
vector_utils = { path = "../enclone_ranger/vector_utils" }
173+
vdj_types = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
174+
vdj_ann = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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vdj_ann_ref = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
176+
vector_utils = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "macklin/remove-internal-run" }
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whoami = "1"
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yaml-rust = "0.4"

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