From 70ba3b967b5f25dd9458e835cecf9dab8a65f743 Mon Sep 17 00:00:00 2001 From: Michael Zingale Date: Mon, 24 Feb 2025 11:02:04 -0500 Subject: [PATCH] fix some refernce macros (#1759) --- Docs/source/eos_implementations.rst | 2 +- Docs/source/networks.rst | 2 +- Docs/source/refs.bib | 46 ++++++++++++++--------------- Docs/source/screening.rst | 2 +- 4 files changed, 25 insertions(+), 27 deletions(-) diff --git a/Docs/source/eos_implementations.rst b/Docs/source/eos_implementations.rst index f8ea10538..c99649d0e 100644 --- a/Docs/source/eos_implementations.rst +++ b/Docs/source/eos_implementations.rst @@ -71,7 +71,7 @@ formulation here is only correct for a :math:`\gamma = 5/3` gas. ``helmholtz`` contains a general, publicly available stellar equation of state based on the Helmholtz free energy, with contributions from ions, radiation, and electron degeneracy, as -described in :cite:`timmes:1999`, :cite:`timmes:2000`, :cite:`flash`. +described in :cite:`timmes:1999, timmes:2000, flash`. .. note:: diff --git a/Docs/source/networks.rst b/Docs/source/networks.rst index d2c6d67b7..4bef0e9e2 100644 --- a/Docs/source/networks.rst +++ b/Docs/source/networks.rst @@ -470,7 +470,7 @@ triple-\ :math:`\alpha`, and rp-breakout burning up through :math:`^{56}\mathrm{ using the ideas from :cite:`wallacewoosley:1981`, but with modern reaction rates from ReacLib :cite:`ReacLib` where available. This network was used for the X-ray burst studies in -:cite:`xrb:II`, :cite:`xrb:III`, and more details are contained in those papers. +:cite:`xrb:II, xrb:III`, and more details are contained in those papers. ``triple_alpha_plus_cago`` ========================== diff --git a/Docs/source/refs.bib b/Docs/source/refs.bib index 952f15365..becb7718a 100644 --- a/Docs/source/refs.bib +++ b/Docs/source/refs.bib @@ -160,8 +160,7 @@ @ARTICLE{colellasekora @ARTICLE{millercolella:2002, author = {{Miller}, G.~H. and {Colella}, P.}, - title = "{A Conservative Three-Dimensional Eulerian Method for Coupled Solid-Fluid Shock \ -Capturing}", + title = "{A Conservative Three-Dimensional Eulerian Method for Coupled Solid-Fluid Shock Capturing}", journal = {Journal of Computational Physics}, year = 2002, month = nov, @@ -183,7 +182,7 @@ @ARTICLE{chamulak:2008 author = {{Chamulak}, D.~A. and {Brown}, E.~F. and {Timmes}, F.~X. and {Dupczak}, K.}, title = "{The Reduction of the Electron Abundance during the Pre-explosion Simmering in White Dwarf Supernovae}", - journal = {\apj}, + journal = {ApJ}, archivePrefix = "arXiv", eprint = {0801.1643}, keywords = {Galaxies: Evolution, Nuclear Reactions, Nucleosynthesis, Abundances, Stars: Supernovae: General, Stars: White Dwarfs}, @@ -200,7 +199,7 @@ @ARTICLE{lowMach4 author = {{Zingale}, M. and {Almgren}, A.~S. and {Bell}, J.~B. and {Nonaka}, A. and {Woosley}, S.~E.}, title = "{Low Mach Number Modeling of Type IA Supernovae. IV. White Dwarf Convection}", - journal = {\apj}, + journal = {ApJ}, archivePrefix = "arXiv", eprint = {0908.2668}, year = 2009, @@ -216,7 +215,7 @@ @ARTICLE{wdconvect author = {{Zingale}, M. and {Nonaka}, A. and {Almgren}, A.~S. and {Bell}, J.~B. and {Malone}, C.~M. and {Woosley}, S.~E.}, title = "{The Convective Phase Preceding Type Ia Supernovae}", - journal = {\apj}, + journal = {ApJ}, keywords = {convection, hydrodynamics, methods: numerical, nuclear reactions, nucleosynthesis, abundances, supernovae: general, white dwarfs}, year = 2011, month = oct, @@ -232,7 +231,7 @@ @ARTICLE{raskin:2010 author = {{Raskin}, C. and {Scannapieco}, E. and {Rockefeller}, G. and {Fryer}, C. and {Diehl}, S. and {Timmes}, F.~X.}, title = "{$^{56}$Ni Production in Double-degenerate White Dwarf Collisions}", - journal = {\apj}, + journal = {ApJ}, archivePrefix = "arXiv", eprint = {1009.2507}, primaryClass = "astro-ph.SR", @@ -250,7 +249,7 @@ @ARTICLE{xrb:III author = {{Zingale}, M. and {Malone}, C.~M. and {Nonaka}, A. and {Almgren}, A.~S. and {Bell}, J.~B.}, title = "{Comparisons of Two- and Three-Dimensional Convection in Type I X-Ray Bursts}", - journal = {\apj}, + journal = {ApJ}, archivePrefix = "arXiv", eprint = {1410.5796}, primaryClass = "astro-ph.HE", @@ -269,7 +268,7 @@ @ARTICLE{xrb:II author = {{Malone}, C.~M. and {Zingale}, M. and {Nonaka}, A. and {Almgren}, A.~S. and {Bell}, J.~B.}, title = "{Multidimensional Modeling of Type I X-Ray Bursts. II. Two-dimensional Convection in a Mixed H/He Accretor}", - journal = {\apj}, + journal = {ApJ}, archivePrefix = "arXiv", eprint = {1404.6286}, primaryClass = "astro-ph.HE", @@ -287,7 +286,7 @@ @ARTICLE{xrb:II @ARTICLE{wallacewoosley:1981, author = {{Wallace}, R.~K. and {Woosley}, S.~E.}, title = "{Explosive hydrogen burning}", - journal = {\apjs}, + journal = {ApJS}, keywords = {Abundance, Astrophysics, Hydrogen, Metallic Stars, Nuclear Fusion, Reaction Kinetics, Stellar Evolution, Gamma Rays, High Temperature, Isotopes, Neutron Stars, Novae, Resonance, Supermassive Stars, X Ray Sources, Astrophysics}, year = 1981, month = feb, @@ -306,7 +305,7 @@ @article{ReacLib and F. K. Thielemann and Michael Wiescher}, title={The JINA REACLIB Database: Its Recent Updates and Impact on Type-I X-ray Bursts}, - journal={\apjs}, + journal={ApJS}, volume={189}, number={1}, pages={240}, @@ -338,7 +337,7 @@ @ARTICLE{vode @ARTICLE{ShenBildsten, author = {{Shen}, K.~J. and {Bildsten}, L.}, title = "{Unstable Helium Shell Burning on Accreting White Dwarfs}", - journal = {\apj}, + journal = {ApJ}, archivePrefix = "arXiv", eprint = {0903.0654v2}, primaryClass = "astro-ph.HE", @@ -369,7 +368,7 @@ @ARTICLE{ma:2013 author = {{Ma}, H. and {Woosley}, S.~E. and {Malone}, C.~M. and {Almgren}, A. and {Bell}, J.}, title = "{Carbon Deflagration in Type Ia Supernova. I. Centrally Ignited Models}", - journal = {\apj}, + journal = {ApJ}, keywords = {hydrodynamics, instabilities, nuclear reactions, nucleosynthesis, abundances, supernovae: general, turbulence, white dwarfs, Astrophysics - High Energy Astrophysical Phenomena, Astrophysics - Solar and Stellar Astrophysics}, year = 2013, month = "jul", @@ -388,7 +387,7 @@ @ARTICLE{ma:2013 @ARTICLE{graboske:1973, author = {{Graboske}, H.~C. and {Dewitt}, H.~E. and {Grossman}, A.~S. and {Cooper}, M.~S.}, title = "{Screening Factors for Nuclear Reactions. II. Intermediate Screen-Ing and Astrophysical Applications}", - journal = {\apj}, + journal = {ApJ}, year = 1973, month = apr, volume = {181}, @@ -401,7 +400,7 @@ @ARTICLE{graboske:1973 @ARTICLE{alastuey:1978, author = {{Alastuey}, A. and {Jancovici}, B.}, title = "{Nuclear reaction rate enhancement in dense stellar matter.}", - journal = {\apj}, + journal = {ApJ}, keywords = {Astrophysics, Magnetohydrodynamics, Nuclear Astrophysics, Reaction Kinetics, Thermonuclear Reactions, Correlation, Nuclei (Nuclear Physics), Perturbation Theory, Potential Theory, Quantum Mechanics, Astrophysics, Nuclear Reactions:Stellar Interiors}, year = 1978, month = dec, @@ -415,7 +414,7 @@ @ARTICLE{alastuey:1978 @ARTICLE{itoh:1979, author = {{Itoh}, N. and {Totsuji}, H. and {Ichimaru}, S. and {Dewitt}, H.~E.}, title = "{Enhancement of thermonuclear reaction rate due to strong screening. II - Ionic mixtures}", - journal = {\apj}, + journal = {ApJ}, keywords = {Nonuniform Plasmas, Reaction Kinetics, Thermonuclear Reactions, Astrophysics, Binary Mixtures, Dense Plasmas, Monte Carlo Method, Astrophysics}, year = 1979, month = dec, @@ -429,7 +428,7 @@ @ARTICLE{itoh:1979 @ARTICLE{chugunov:2007, author = {{Chugunov}, A.~I. and {Dewitt}, H.~E. and {Yakovlev}, D.~G.}, title = "{Coulomb tunneling for fusion reactions in dense matter: Path integral MonteCarlo versus mean field}", - journal = {\prd}, + journal = {PRD}, keywords = {26.30.+k, Nucleosynthesis in novae supernovae and other explosive environments, Astrophysics, Nuclear Theory}, year = 2007, month = jul, @@ -448,7 +447,7 @@ @ARTICLE{chugunov:2007 @ARTICLE{yakovlev:2006, author = {{Yakovlev}, D.~G. and {Gasques}, L.~R. and {Afanasjev}, A.~V. and {Beard}, M. and {Wiescher}, M.}, title = "{Fusion reactions in multicomponent dense matter}", - journal = {\prc}, + journal = {PRC}, keywords = {25.60.Pj, 26.50.+x, 97.10.Cv, Fusion reactions, Nuclear physics aspects of novae supernovae and other explosive environments, Stellar structure interiors evolution nucleosynthesis ages, Astrophysics, Nuclear Theory}, year = 2006, month = sep, @@ -467,7 +466,7 @@ @ARTICLE{yakovlev:2006 @ARTICLE{chugunov:2009, author = {{Chugunov}, A.~I. and {Dewitt}, H.~E.}, title = "{Nuclear fusion reaction rates for strongly coupled ionic mixtures}", - journal = {\prc}, + journal = {PRC}, keywords = {26.30.-k, Nucleosynthesis in novae supernovae and other explosive environments, Astrophysics - Solar and Stellar Astrophysics, Astrophysics - High Energy Astrophysical Phenomena}, year = 2009, month = jul, @@ -545,7 +544,7 @@ @ARTICLE{jancovici:1977 @ARTICLE{Wallace:1982, author = {{Wallace}, R.~K. and {Woosley}, S.~E. and {Weaver}, T.~A.}, title = "{The thermonuclear model for X-ray transients}", - journal = {\apj}, + journal = {ApJ}, keywords = {Binary Stars, Neutron Stars, Red Giant Stars, Stellar Mass Accretion, Stellar Models, Thermonuclear Reactions, X Ray Sources, Eddington Approximation, Stellar Envelopes, Stellar Evolution, Stellar Luminosity, Stellar Mass Ejection, Stellar Temperature, Astrophysics}, year = 1982, month = jul, @@ -622,7 +621,6 @@ @misc{autodiff author = {Leal, Allan M. M.}, title = {autodiff, a modern, fast and expressive {C++} library for automatic differentiation}, url = {https://autodiff.github.io}, - howpublished = {\texttt{https://autodiff.github.io}}, year = {2018} } @@ -691,7 +689,7 @@ @article{langanke:2001 @ARTICLE{itoh:1996, author = {{Itoh}, Naoki and {Hayashi}, Hiroshi and {Nishikawa}, Akinori and {Kohyama}, Yasuharu}, title = "{Neutrino Energy Loss in Stellar Interiors. VII. Pair, Photo-, Plasma, Bremsstrahlung, and Recombination Neutrino Processes}", - journal = {\apjs}, + journal = {ApJS}, keywords = {DENSE MATTER, ELEMENTARY PARTICLES, RADIATION MECHANISMS: NONTHERMAL, STARS: INTERIORS, METHODS: NUMERICAL}, year = 1996, month = feb, @@ -705,7 +703,7 @@ @ARTICLE{itoh:1996 @ARTICLE{iso7, author = {{Timmes}, F.~X. and {Hoffman}, R.~D. and {Woosley}, S.~E.}, title = "{An Inexpensive Nuclear Energy Generation Network for Stellar Hydrodynamics}", - journal = {\apjs}, + journal = {ApJS}, keywords = {Hydrodynamics, Methods: Numerical, Nuclear Reactions, Nucleosynthesis, Abundances, Stars: General}, year = 2000, month = jul, @@ -733,7 +731,7 @@ @article{amrex_joss @ARTICLE{maestroex, author = {{Fan}, Duoming and {Nonaka}, Andrew and {Almgren}, Ann S. and {Harpole}, Alice and {Zingale}, Michael}, title = "{MAESTROeX: A Massively Parallel Low Mach Number Astrophysical Solver}", - journal = {\apj}, + journal = {ApJ}, keywords = {Stellar convective zones, Hydrodynamics, Computational methods, Nuclear astrophysics, Nucleosynthesis, Nuclear abundances, 301, 1963, 1965, 1129, 1131, 1128, Physics - Computational Physics, Astrophysics - Solar and Stellar Astrophysics}, year = 2019, month = dec, @@ -753,7 +751,7 @@ @ARTICLE{maestroex @ARTICLE{quokka, author = {{Wibking}, Benjamin D. and {Krumholz}, Mark R.}, title = "{QUOKKA: a code for two-moment AMR radiation hydrodynamics on GPUs}", - journal = {\mnras}, + journal = {MNRAS}, keywords = {hydrodynamics, methods: numerical, Astrophysics - Instrumentation and Methods for Astrophysics}, year = 2022, month = may, diff --git a/Docs/source/screening.rst b/Docs/source/screening.rst index 7d9cbd25c..5223bbbac 100644 --- a/Docs/source/screening.rst +++ b/Docs/source/screening.rst @@ -60,7 +60,7 @@ The options are: :math:`\Gamma < 0.3`, it uses screening described in :cite:`graboske:1973`. In the strong screening regime, :math:`\Gamma > 0.8`, it uses screening described in - :cite:`jancovici:1977`, :cite:`alastuey:1978`, :cite:`itoh:1979`. + :cite:`jancovici:1977, alastuey:1978, itoh:1979`. For the intermediate screening regime, :math:`0.3 < \Gamma < 0.8`, a weighted blending between the weak and strong screening are used. The overall procedure is described in :cite:`Wallace:1982`.