From eb7ebcf65355b5cbae48114d830bce642c44b508 Mon Sep 17 00:00:00 2001
From: Michael Zingale <michael.zingale@stonybrook.edu>
Date: Sat, 4 May 2024 17:52:11 -0400
Subject: [PATCH] more fixes

---
 .clang-tidy            |  2 +-
 source/fluxes/main.cpp | 17 +++++++++--------
 2 files changed, 10 insertions(+), 9 deletions(-)

diff --git a/.clang-tidy b/.clang-tidy
index 1e22849..2ab8a4f 100644
--- a/.clang-tidy
+++ b/.clang-tidy
@@ -40,4 +40,4 @@ Checks: >
      mpi-*,
      openmp-*
 
-HeaderFilterRegex: '(/conductivity/|/constants/|/EOS/|/integration/|/interfaces/|/networks/|/neutrinos/|/nse_solver/|/opacity/|/rates/|/screening/|/util/|^\./|^./tmp_build_dir/microphysics_sources/*/).*\.H$'
\ No newline at end of file
+HeaderFilterRegex: '(/source/*/|^\./|^./tmp_build_dir/microphysics_sources/*/).*\.H$'
\ No newline at end of file
diff --git a/source/fluxes/main.cpp b/source/fluxes/main.cpp
index 091fe7e..67588b1 100644
--- a/source/fluxes/main.cpp
+++ b/source/fluxes/main.cpp
@@ -31,7 +31,7 @@ get_vy_index(const std::vector<std::string>& var_names_pf) {
     if (idx == var_names_pf.cend()) {
         amrex::Error("Error: could not find vely component");
     }
-    return std::distance(var_names_pf.cbegin(), idx);
+    return static_cast<int>(std::distance(var_names_pf.cbegin(), idx));
 }
 
 inline int
@@ -41,7 +41,7 @@ get_vz_index(const std::vector<std::string>& var_names_pf) {
     if (idx == var_names_pf.cend()) {
         amrex::Error("Error: could not find velz component");
     }
-    return std::distance(var_names_pf.cbegin(), idx);
+    return static_cast<int>(std::distance(var_names_pf.cbegin(), idx));
 }
 
 inline int
@@ -51,12 +51,11 @@ get_dT_index(const std::vector<std::string>& var_names_pf) {
     if (idx == var_names_pf.cend()) {
         amrex::Error("Error: could not find tpert component");
     }
-    return std::distance(var_names_pf.cbegin(), idx);
+    return static_cast<int>(std::distance(var_names_pf.cbegin(), idx));
 }
 
 void main_main()
 {
-    const int narg = amrex::command_argument_count();
 
     std::string pltfile(diag_rp::plotfile);
 
@@ -98,10 +97,12 @@ void main_main()
     int spec_comp = get_spec_index(var_names_pf);
     int dT_comp = get_dT_index(var_names_pf);
 
-    int v_comp = get_vy_index(var_names_pf);
-    if (ndims == 3) {
+    int vcomp{-1};
+    if (ndims == 2) {
+        v_comp = get_vy_index(var_names_pf);
+    } else if (ndims == 3) {
         // z is the vertical
-        int v_comp = get_vz_index(var_names_pf);
+       v_comp = get_vz_index(var_names_pf);
     }
 
     // create the variable names we will derive and store in the output
@@ -140,7 +141,7 @@ void main_main()
 
         // output MultiFab
 
-        gmf[ilev].define(pf.boxArray(ilev), pf.DistributionMap(ilev), gvarnames.size(), 0);
+        gmf[ilev].define(pf.boxArray(ilev), pf.DistributionMap(ilev), static_cast<int>(gvarnames.size()), 0);
 
         Vector<BCRec> bcr{bcr_default};
         auto is_per = is_periodic;