diff --git a/docs_html/.buildinfo b/docs_html/.buildinfo index cb087a71..f745a392 100644 --- a/docs_html/.buildinfo +++ b/docs_html/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. -config: b4e54ee51512613bde0a4628e93714d9 +config: e5256ac128ff4a0b422734b9587adb82 tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/docs_html/Debugging.html b/docs_html/Debugging.html index a9e69ed0..a7ff7139 100644 --- a/docs_html/Debugging.html +++ b/docs_html/Debugging.html @@ -4,7 +4,7 @@ - Debugging — incflo 24.05-dev documentation + Debugging — incflo 24.06-dev documentation @@ -16,7 +16,7 @@ - + @@ -37,7 +37,7 @@ incflo
- 24.05-dev + 24.06-dev
@@ -100,7 +100,7 @@
VisMF::Write(const FabArray<FArrayBox>& mf, const std::string& name);
 
-

and examining it with Amrvis (section Amrvis in the AMReX documentation).

+

and examining it with Amrvis (section Amrvis in the AMReX documentation).

  • You can also use the print_state routine:

    void print_state(const MultiFab& mf, const IntVect& cell, const int n=-1);
    @@ -126,7 +126,7 @@
     
  • -

    Also see AMReX’s documentation on Debugging for further suggestions.

    +

    Also see AMReX’s documentation on Debugging for further suggestions.

    If you believe you’ve encountered a bug or incorrect behavior in incflo, please report the issue on incflo’s github page here .

    diff --git a/docs_html/EB.html b/docs_html/EB.html index 0dd62b5f..4460149a 100644 --- a/docs_html/EB.html +++ b/docs_html/EB.html @@ -4,7 +4,7 @@ - Embedded Boundaries — incflo 24.05-dev documentation + Embedded Boundaries — incflo 24.06-dev documentation @@ -16,7 +16,7 @@ - + @@ -38,7 +38,7 @@ incflo
    - 24.05-dev + 24.06-dev
    @@ -94,7 +94,7 @@ See MFIX’s CSG-EB repository for more details about this format.

    incflo provides several options of embedded boundary geometries. The inputs parameter incflo.geometry = XXX determines which geometry is selected by incflo::MakeEBGeometry() within incflo/src/embedded_boundaries. -The procedure to create your own EB geometry is described in the AMReX documentation on Initializing the Geometric Database. +The procedure to create your own EB geometry is described in the AMReX documentation on Initializing the Geometric Database. As discussed in the AMReX documentation, note that when constructing the EB, we must specify a maxium coarsening level (max_crse_level):

    EB2::Build(gshop, geom[lev], required_crse_lev, max_crse_level);
    diff --git a/docs_html/FluidEquations.html b/docs_html/FluidEquations.html
    index 356e5ca5..d396e7b5 100644
    --- a/docs_html/FluidEquations.html
    +++ b/docs_html/FluidEquations.html
    @@ -4,7 +4,7 @@
       
     
       
    -  Fluid Variables — incflo 24.05-dev documentation
    +  Fluid Variables — incflo 24.06-dev documentation
           
           
           
    @@ -16,7 +16,7 @@
       
             
             
    -        
    +        
             
             
             
    @@ -39,7 +39,7 @@
                 incflo
               
                   
    - 24.05-dev + 24.06-dev
    diff --git a/docs_html/Fluids_Chapter.html b/docs_html/Fluids_Chapter.html index a9790033..934ce39b 100644 --- a/docs_html/Fluids_Chapter.html +++ b/docs_html/Fluids_Chapter.html @@ -4,7 +4,7 @@ - Solving the Fluid Equations — incflo 24.05-dev documentation + Solving the Fluid Equations — incflo 24.06-dev documentation @@ -16,7 +16,7 @@ - + @@ -39,7 +39,7 @@ incflo
    - 24.05-dev + 24.06-dev
    diff --git a/docs_html/GettingStarted.html b/docs_html/GettingStarted.html index 8c083f46..e908136e 100644 --- a/docs_html/GettingStarted.html +++ b/docs_html/GettingStarted.html @@ -4,7 +4,7 @@ - Getting Started — incflo 24.05-dev documentation + Getting Started — incflo 24.06-dev documentation @@ -16,7 +16,7 @@ - + @@ -38,7 +38,7 @@ incflo
    - 24.05-dev + 24.06-dev
    @@ -438,11 +438,11 @@

    Running the codechk00010, etc. These are called plotfiles and checkpoint files. The plotfiles are used for visualization of derived fields; the checkpoint files are used for restarting the code. For more information see the AMReX Documentation on -I/O (Plotfile, Checkpoint).

    +I/O (Plotfile, Checkpoint).

    Visualizing the Results

    -

    Options for visualizing the data are discussed in the AMReX Documenation on Visualization.

    +

    Options for visualizing the data are discussed in the AMReX Documenation on Visualization.

    diff --git a/docs_html/InputsAlgorithm.html b/docs_html/InputsAlgorithm.html index 0c2dfc15..49982069 100644 --- a/docs_html/InputsAlgorithm.html +++ b/docs_html/InputsAlgorithm.html @@ -4,7 +4,7 @@ - Algorithm Options — incflo 24.05-dev documentation + Algorithm Options — incflo 24.06-dev documentation @@ -16,7 +16,7 @@ - + @@ -39,7 +39,7 @@ incflo
    - 24.05-dev + 24.06-dev
    diff --git a/docs_html/InputsCheckpoint.html b/docs_html/InputsCheckpoint.html index 3554c2f5..99ce0f64 100644 --- a/docs_html/InputsCheckpoint.html +++ b/docs_html/InputsCheckpoint.html @@ -4,7 +4,7 @@ - Checkpoint/Restart — incflo 24.05-dev documentation + Checkpoint/Restart — incflo 24.06-dev documentation @@ -16,7 +16,7 @@ - + @@ -38,7 +38,7 @@ incflo
    - 24.05-dev + 24.06-dev
    diff --git a/docs_html/InputsInitialization.html b/docs_html/InputsInitialization.html index d8461c48..9235820b 100644 --- a/docs_html/InputsInitialization.html +++ b/docs_html/InputsInitialization.html @@ -4,7 +4,7 @@ - Initialization — incflo 24.05-dev documentation + Initialization — incflo 24.06-dev documentation @@ -16,7 +16,7 @@ - + @@ -38,7 +38,7 @@ incflo
    - 24.05-dev + 24.06-dev
    diff --git a/docs_html/InputsLoadBalancing.html b/docs_html/InputsLoadBalancing.html index 77c986f1..3cc273fb 100644 --- a/docs_html/InputsLoadBalancing.html +++ b/docs_html/InputsLoadBalancing.html @@ -4,7 +4,7 @@ - Gridding and Load Balancing — incflo 24.05-dev documentation + Gridding and Load Balancing — incflo 24.06-dev documentation @@ -16,7 +16,7 @@ - + @@ -38,7 +38,7 @@ incflo
    - 24.05-dev + 24.06-dev
    @@ -98,7 +98,7 @@

    Gridding and Load Balancing

    The following inputs must be preceded by “amr” and determine how we create the grids and how often we regrid. The most -commonly used options are listed here. See the AMReX documentation on Gridding and Load Balancing for additional +commonly used options are listed here. See the AMReX documentation on Gridding and Load Balancing for additional options.

    diff --git a/docs_html/InputsMultigrid.html b/docs_html/InputsMultigrid.html index b420695d..42e84815 100644 --- a/docs_html/InputsMultigrid.html +++ b/docs_html/InputsMultigrid.html @@ -4,7 +4,7 @@ - Multigrid Inputs — incflo 24.05-dev documentation + Multigrid Inputs — incflo 24.06-dev documentation @@ -16,7 +16,7 @@ - + @@ -38,7 +38,7 @@ incflo
    - 24.05-dev + 24.06-dev
    diff --git a/docs_html/InputsPlotFiles.html b/docs_html/InputsPlotFiles.html index 3ca00692..355213a7 100644 --- a/docs_html/InputsPlotFiles.html +++ b/docs_html/InputsPlotFiles.html @@ -4,7 +4,7 @@ - Plotfiles and Other Output — incflo 24.05-dev documentation + Plotfiles and Other Output — incflo 24.06-dev documentation @@ -16,7 +16,7 @@ - + @@ -38,7 +38,7 @@ incflo
    - 24.05-dev + 24.06-dev
    diff --git a/docs_html/InputsProblemDefinition.html b/docs_html/InputsProblemDefinition.html index 12c8a475..7acd3572 100644 --- a/docs_html/InputsProblemDefinition.html +++ b/docs_html/InputsProblemDefinition.html @@ -4,7 +4,7 @@ - Problem Definition — incflo 24.05-dev documentation + Problem Definition — incflo 24.06-dev documentation @@ -16,7 +16,7 @@ - + @@ -38,7 +38,7 @@ incflo
    - 24.05-dev + 24.06-dev
    diff --git a/docs_html/InputsTimeStepping.html b/docs_html/InputsTimeStepping.html index 316862f7..07721a96 100644 --- a/docs_html/InputsTimeStepping.html +++ b/docs_html/InputsTimeStepping.html @@ -4,7 +4,7 @@ - Time Stepping — incflo 24.05-dev documentation + Time Stepping — incflo 24.06-dev documentation @@ -16,7 +16,7 @@ - + @@ -38,7 +38,7 @@ incflo
    - 24.05-dev + 24.06-dev
    diff --git a/docs_html/InputsVerbosity.html b/docs_html/InputsVerbosity.html index 894db1c2..29996490 100644 --- a/docs_html/InputsVerbosity.html +++ b/docs_html/InputsVerbosity.html @@ -4,7 +4,7 @@ - Verbosity — incflo 24.05-dev documentation + Verbosity — incflo 24.06-dev documentation @@ -16,7 +16,7 @@ - + @@ -38,7 +38,7 @@ incflo
    - 24.05-dev + 24.06-dev
    diff --git a/docs_html/Inputs_Chapter.html b/docs_html/Inputs_Chapter.html index 4363830f..6e394d19 100644 --- a/docs_html/Inputs_Chapter.html +++ b/docs_html/Inputs_Chapter.html @@ -4,7 +4,7 @@ - Run-time Inputs — incflo 24.05-dev documentation + Run-time Inputs — incflo 24.06-dev documentation @@ -16,7 +16,7 @@ - + @@ -39,7 +39,7 @@ incflo
    - 24.05-dev + 24.06-dev
    diff --git a/docs_html/Introduction.html b/docs_html/Introduction.html index 79d165f3..ffb7b3c8 100644 --- a/docs_html/Introduction.html +++ b/docs_html/Introduction.html @@ -4,7 +4,7 @@ - Introduction — incflo 24.05-dev documentation + Introduction — incflo 24.06-dev documentation @@ -16,7 +16,7 @@ - + @@ -38,7 +38,7 @@ incflo
    - 24.05-dev + 24.06-dev
    @@ -88,7 +88,7 @@

    IntroductionAMReX, a publicly available software framework designed for building +

    It is built on top of AMReX, a publicly available software framework designed for building massively parallel block-structured adaptive mesh refinement (AMR) applications. It also utilizes AMReX-Hydro, a set of routines that support the construction of convective terms for incompressible and low Mach number flow modeling in cartesian coordinates diff --git a/docs_html/ManagingGridHierarchy_Chapter.html b/docs_html/ManagingGridHierarchy_Chapter.html index c7a9c698..96ee2d7b 100644 --- a/docs_html/ManagingGridHierarchy_Chapter.html +++ b/docs_html/ManagingGridHierarchy_Chapter.html @@ -4,7 +4,7 @@ - Gridding and Load Balancing — incflo 24.05-dev documentation + Gridding and Load Balancing — incflo 24.06-dev documentation @@ -16,7 +16,7 @@ - + @@ -38,7 +38,7 @@ incflo

    - 24.05-dev + 24.06-dev
    @@ -89,16 +89,16 @@

    Gridding and Load BalancingGridding and Load Balancing contains further details. -See Grid Creation for grids are created, i.e. how the BoxArray on which +

    AMReX’s docmumentation on Gridding and Load Balancing contains further details. +See Grid Creation for grids are created, i.e. how the BoxArray on which MultiFabs will be built is defined at each level. -See Load Balancing for the strategies AMReX supports for distributing +See Load Balancing for the strategies AMReX supports for distributing grids to MPI ranks, i.e. defining the DistributionMapping with which MultiFabs at that level will be built.

    When running on multicore machines with OpenMP, we can also control the distribution of work by setting the size of grid tiles (by defining fabarray.mfiter_tile_size). We can also specify the strategy for assigning tiles to OpenMP threads. -See MFIter with Tiling for more about tiling.

    +See MFIter with Tiling for more about tiling.

    diff --git a/docs_html/TimeStep.html b/docs_html/TimeStep.html index a5d3eab0..47c119fe 100644 --- a/docs_html/TimeStep.html +++ b/docs_html/TimeStep.html @@ -4,7 +4,7 @@ - Time Step — incflo 24.05-dev documentation + Time Step — incflo 24.06-dev documentation @@ -16,7 +16,7 @@ - + @@ -39,7 +39,7 @@ incflo
    - 24.05-dev + 24.06-dev
    diff --git a/docs_html/_static/documentation_options.js b/docs_html/_static/documentation_options.js index 6a915610..49e736e3 100644 --- a/docs_html/_static/documentation_options.js +++ b/docs_html/_static/documentation_options.js @@ -1,5 +1,5 @@ const DOCUMENTATION_OPTIONS = { - VERSION: '24.05-dev', + VERSION: '24.06-dev', LANGUAGE: 'en', COLLAPSE_INDEX: false, BUILDER: 'html', diff --git a/docs_html/genindex.html b/docs_html/genindex.html index 07a1593d..ece437c0 100644 --- a/docs_html/genindex.html +++ b/docs_html/genindex.html @@ -3,7 +3,7 @@ - Index — incflo 24.05-dev documentation + Index — incflo 24.06-dev documentation @@ -15,7 +15,7 @@ - + @@ -35,7 +35,7 @@ incflo
    - 24.05-dev + 24.06-dev
    diff --git a/docs_html/index.html b/docs_html/index.html index 717c0364..f6a9dde6 100644 --- a/docs_html/index.html +++ b/docs_html/index.html @@ -4,7 +4,7 @@ - Welcome to incflo’s documentation! — incflo 24.05-dev documentation + Welcome to incflo’s documentation! — incflo 24.06-dev documentation @@ -16,7 +16,7 @@ - + @@ -38,7 +38,7 @@ incflo
    - 24.05-dev + 24.06-dev
    diff --git a/docs_html/objects.inv b/docs_html/objects.inv index 019e1291..5cb1a78b 100644 Binary files a/docs_html/objects.inv and b/docs_html/objects.inv differ diff --git a/docs_html/search.html b/docs_html/search.html index 79712add..bc017033 100644 --- a/docs_html/search.html +++ b/docs_html/search.html @@ -3,7 +3,7 @@ - Search — incflo 24.05-dev documentation + Search — incflo 24.06-dev documentation @@ -16,7 +16,7 @@ - + @@ -38,7 +38,7 @@ incflo
    - 24.05-dev + 24.06-dev