From a1ff46e206ad750e2e81a521e6cbe1194752200d Mon Sep 17 00:00:00 2001 From: asalmgren Date: Tue, 8 Oct 2024 17:07:05 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20AMReX-Fl?= =?UTF-8?q?uids/incflo@197009548adb258f749f9e9bbc4e4000b7648982=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- docs_html/.buildinfo | 2 +- docs_html/Debugging.html | 27 +-- docs_html/EB.html | 25 +-- docs_html/FluidEquations.html | 25 +-- docs_html/Fluids_Chapter.html | 25 +-- docs_html/GettingStarted.html | 27 +-- docs_html/InputsAlgorithm.html | 33 +-- docs_html/InputsCheckpoint.html | 23 +- docs_html/InputsInitialization.html | 23 +- docs_html/InputsLoadBalancing.html | 23 +- docs_html/InputsMultigrid.html | 23 +- docs_html/InputsPlotFiles.html | 23 +- docs_html/InputsProblemDefinition.html | 23 +- docs_html/InputsTimeStepping.html | 23 +- docs_html/InputsVerbosity.html | 23 +- docs_html/Inputs_Chapter.html | 25 +-- docs_html/Introduction.html | 25 +-- docs_html/ManagingGridHierarchy_Chapter.html | 31 ++- docs_html/TimeStep.html | 25 +-- docs_html/_sources/InputsAlgorithm.rst.txt | 3 + docs_html/_static/css/badge_only.css | 2 +- docs_html/_static/css/theme.css | 2 +- docs_html/_static/documentation_options.js | 2 +- docs_html/_static/js/versions.js | 224 +++++++++++++++++++ docs_html/genindex.html | 23 +- docs_html/index.html | 25 +-- docs_html/objects.inv | Bin 946 -> 946 bytes docs_html/search.html | 23 +- docs_html/searchindex.js | 2 +- 29 files changed, 444 insertions(+), 316 deletions(-) create mode 100644 docs_html/_static/js/versions.js diff --git a/docs_html/.buildinfo b/docs_html/.buildinfo index 33a736024..1ae72cee3 100644 --- a/docs_html/.buildinfo +++ b/docs_html/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. -config: 60bdbdc153dc662c31ec8c53e5ec95c8 +config: 9622626d96e2441b84aaa5770dcdc386 tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/docs_html/Debugging.html b/docs_html/Debugging.html index b9d250d38..b5ca92267 100644 --- a/docs_html/Debugging.html +++ b/docs_html/Debugging.html @@ -1,24 +1,22 @@ + + - Debugging — incflo 24.10-dev documentation + Debugging — incflo 24.11-dev documentation - + - - - - - - - + + + + + @@ -36,9 +34,6 @@ incflo -
- 24.10-dev -
@@ -100,7 +95,7 @@
VisMF::Write(const FabArray<FArrayBox>& mf, const std::string& name);
 
-

and examining it with Amrvis (section Amrvis in the AMReX documentation).

+

and examining it with Amrvis (section Amrvis in the AMReX documentation).

  • You can also use the print_state routine:

    void print_state(const MultiFab& mf, const IntVect& cell, const int n=-1);
    @@ -126,7 +121,7 @@
     
  • -

    Also see AMReX’s documentation on Debugging for further suggestions.

    +

    Also see AMReX’s documentation on Debugging for further suggestions.

    If you believe you’ve encountered a bug or incorrect behavior in incflo, please report the issue on incflo’s github page here .

    diff --git a/docs_html/EB.html b/docs_html/EB.html index 71c09577b..fd7efd39a 100644 --- a/docs_html/EB.html +++ b/docs_html/EB.html @@ -1,24 +1,22 @@ + + - Embedded Boundaries — incflo 24.10-dev documentation + Embedded Boundaries — incflo 24.11-dev documentation - + - - - - - - - + + + + + @@ -37,9 +35,6 @@ incflo -
    - 24.10-dev -
    @@ -94,7 +89,7 @@ See MFIX’s CSG-EB repository for more details about this format.

    incflo provides several options of embedded boundary geometries. The inputs parameter incflo.geometry = XXX determines which geometry is selected by incflo::MakeEBGeometry() within incflo/src/embedded_boundaries. -The procedure to create your own EB geometry is described in the AMReX documentation on Initializing the Geometric Database. +The procedure to create your own EB geometry is described in the AMReX documentation on Initializing the Geometric Database. As discussed in the AMReX documentation, note that when constructing the EB, we must specify a maximum coarsening level (max_crse_level):

    EB2::Build(gshop, geom[lev], required_crse_lev, max_crse_level);
    diff --git a/docs_html/FluidEquations.html b/docs_html/FluidEquations.html
    index cd8c1f42b..e28d785fa 100644
    --- a/docs_html/FluidEquations.html
    +++ b/docs_html/FluidEquations.html
    @@ -1,25 +1,23 @@
    +
    +
     
     
     
       
     
       
    -  Fluid Variables — incflo 24.10-dev documentation
    +  Fluid Variables — incflo 24.11-dev documentation
           
    -      
    +      
           
     
       
    -  
    -  
    -        
    -        
    -        
    -        
    -        
    -        
    +      
    +      
    +      
    +      
    +      
    +      
         
         
         
    @@ -38,9 +36,6 @@
               
                 incflo
               
    -              
    - 24.10-dev -
    diff --git a/docs_html/Fluids_Chapter.html b/docs_html/Fluids_Chapter.html index c3144e796..68c40eb8d 100644 --- a/docs_html/Fluids_Chapter.html +++ b/docs_html/Fluids_Chapter.html @@ -1,25 +1,23 @@ + + - Solving the Fluid Equations — incflo 24.10-dev documentation + Solving the Fluid Equations — incflo 24.11-dev documentation - + - - - - - - - - + + + + + + @@ -38,9 +36,6 @@ incflo -
    - 24.10-dev -
    diff --git a/docs_html/GettingStarted.html b/docs_html/GettingStarted.html index ba29e47b5..e9fa72d0b 100644 --- a/docs_html/GettingStarted.html +++ b/docs_html/GettingStarted.html @@ -1,24 +1,22 @@ + + - Getting Started — incflo 24.10-dev documentation + Getting Started — incflo 24.11-dev documentation - + - - - - - - - + + + + + @@ -37,9 +35,6 @@ incflo -
    - 24.10-dev -
    @@ -438,11 +433,11 @@

    Running the codechk00010, etc. These are called plotfiles and checkpoint files. The plotfiles are used for visualization of derived fields; the checkpoint files are used for restarting the code. For more information see the AMReX Documentation on -I/O (Plotfile, Checkpoint).

    +I/O (Plotfile, Checkpoint).

    Visualizing the Results

    -

    Options for visualizing the data are discussed in the AMReX Documentation on Visualization.

    +

    Options for visualizing the data are discussed in the AMReX Documentation on Visualization.

    diff --git a/docs_html/InputsAlgorithm.html b/docs_html/InputsAlgorithm.html index 88fc0a73a..4f41ad12e 100644 --- a/docs_html/InputsAlgorithm.html +++ b/docs_html/InputsAlgorithm.html @@ -1,25 +1,23 @@ + + - Algorithm Options — incflo 24.10-dev documentation + Algorithm Options — incflo 24.11-dev documentation - + - - - - - - - - + + + + + + @@ -38,9 +36,6 @@ incflo -
    - 24.10-dev -
    @@ -158,7 +153,13 @@

    Real(s)

    0.0

    -

    use_tensor_solve

    +

    use_cc_proj

    +

    Use cell-centered rather than nodal pressure; this changes the +which approximate projection we use

    +

    bool

    +

    false

    + +

    use_tensor_solve

    In velocity solve, use multicomponent \(\nabla \cdot \tau\) otherwise use separate solves for each velocity component

    bool

    diff --git a/docs_html/InputsCheckpoint.html b/docs_html/InputsCheckpoint.html index 1cb4d8ce9..e53f4e896 100644 --- a/docs_html/InputsCheckpoint.html +++ b/docs_html/InputsCheckpoint.html @@ -1,24 +1,22 @@ + + - Checkpoint/Restart — incflo 24.10-dev documentation + Checkpoint/Restart — incflo 24.11-dev documentation - + - - - - - - - + + + + + @@ -37,9 +35,6 @@ incflo -
    - 24.10-dev -
    diff --git a/docs_html/InputsInitialization.html b/docs_html/InputsInitialization.html index 2a51485a3..eb8e632f6 100644 --- a/docs_html/InputsInitialization.html +++ b/docs_html/InputsInitialization.html @@ -1,24 +1,22 @@ + + - Initialization — incflo 24.10-dev documentation + Initialization — incflo 24.11-dev documentation - + - - - - - - - + + + + + @@ -37,9 +35,6 @@ incflo -
    - 24.10-dev -
    diff --git a/docs_html/InputsLoadBalancing.html b/docs_html/InputsLoadBalancing.html index aaa56714c..cfa432b6b 100644 --- a/docs_html/InputsLoadBalancing.html +++ b/docs_html/InputsLoadBalancing.html @@ -1,24 +1,22 @@ + + - Gridding and Load Balancing — incflo 24.10-dev documentation + Gridding and Load Balancing — incflo 24.11-dev documentation - + - - - - - - - + + + + + @@ -37,9 +35,6 @@ incflo -
    - 24.10-dev -
    diff --git a/docs_html/InputsMultigrid.html b/docs_html/InputsMultigrid.html index 300f805f0..67fe5fa3d 100644 --- a/docs_html/InputsMultigrid.html +++ b/docs_html/InputsMultigrid.html @@ -1,24 +1,22 @@ + + - Multigrid Inputs — incflo 24.10-dev documentation + Multigrid Inputs — incflo 24.11-dev documentation - + - - - - - - - + + + + + @@ -37,9 +35,6 @@ incflo -
    - 24.10-dev -
    diff --git a/docs_html/InputsPlotFiles.html b/docs_html/InputsPlotFiles.html index 01ae23c66..9e5e6d308 100644 --- a/docs_html/InputsPlotFiles.html +++ b/docs_html/InputsPlotFiles.html @@ -1,24 +1,22 @@ + + - Plotfiles and Other Output — incflo 24.10-dev documentation + Plotfiles and Other Output — incflo 24.11-dev documentation - + - - - - - - - + + + + + @@ -37,9 +35,6 @@ incflo -
    - 24.10-dev -
    diff --git a/docs_html/InputsProblemDefinition.html b/docs_html/InputsProblemDefinition.html index a72836009..66cb82b5e 100644 --- a/docs_html/InputsProblemDefinition.html +++ b/docs_html/InputsProblemDefinition.html @@ -1,24 +1,22 @@ + + - Problem Definition — incflo 24.10-dev documentation + Problem Definition — incflo 24.11-dev documentation - + - - - - - - - + + + + + @@ -37,9 +35,6 @@ incflo -
    - 24.10-dev -
    diff --git a/docs_html/InputsTimeStepping.html b/docs_html/InputsTimeStepping.html index f15e071ad..829ef12e1 100644 --- a/docs_html/InputsTimeStepping.html +++ b/docs_html/InputsTimeStepping.html @@ -1,24 +1,22 @@ + + - Time Stepping — incflo 24.10-dev documentation + Time Stepping — incflo 24.11-dev documentation - + - - - - - - - + + + + + @@ -37,9 +35,6 @@ incflo -
    - 24.10-dev -
    diff --git a/docs_html/InputsVerbosity.html b/docs_html/InputsVerbosity.html index 8e51224c2..0d111f6c6 100644 --- a/docs_html/InputsVerbosity.html +++ b/docs_html/InputsVerbosity.html @@ -1,24 +1,22 @@ + + - Verbosity — incflo 24.10-dev documentation + Verbosity — incflo 24.11-dev documentation - + - - - - - - - + + + + + @@ -37,9 +35,6 @@ incflo -
    - 24.10-dev -
    diff --git a/docs_html/Inputs_Chapter.html b/docs_html/Inputs_Chapter.html index 7f1965f0e..e57aec623 100644 --- a/docs_html/Inputs_Chapter.html +++ b/docs_html/Inputs_Chapter.html @@ -1,25 +1,23 @@ + + - Run-time Inputs — incflo 24.10-dev documentation + Run-time Inputs — incflo 24.11-dev documentation - + - - - - - - - - + + + + + + @@ -38,9 +36,6 @@ incflo -
    - 24.10-dev -
    diff --git a/docs_html/Introduction.html b/docs_html/Introduction.html index 2803ffb09..df7eefdd8 100644 --- a/docs_html/Introduction.html +++ b/docs_html/Introduction.html @@ -1,24 +1,22 @@ + + - Introduction — incflo 24.10-dev documentation + Introduction — incflo 24.11-dev documentation - + - - - - - - - + + + + + @@ -37,9 +35,6 @@ incflo -
    - 24.10-dev -
    @@ -88,7 +83,7 @@

    IntroductionAMReX, a publicly available software framework designed for building +

    It is built on top of AMReX, a publicly available software framework designed for building massively parallel block-structured adaptive mesh refinement (AMR) applications. It also utilizes AMReX-Hydro, a set of routines that support the construction of convective terms for incompressible and low Mach number flow modeling in cartesian coordinates diff --git a/docs_html/ManagingGridHierarchy_Chapter.html b/docs_html/ManagingGridHierarchy_Chapter.html index ca07bd894..c9f82cf77 100644 --- a/docs_html/ManagingGridHierarchy_Chapter.html +++ b/docs_html/ManagingGridHierarchy_Chapter.html @@ -1,24 +1,22 @@ + + - Gridding and Load Balancing — incflo 24.10-dev documentation + Gridding and Load Balancing — incflo 24.11-dev documentation - + - - - - - - - + + + + + @@ -37,9 +35,6 @@ incflo -

    - 24.10-dev -
    @@ -89,16 +84,16 @@

    Gridding and Load BalancingGridding and Load Balancing contains further details. -See Grid Creation for grids are created, i.e. how the BoxArray on which +

    AMReX’s docmumentation on Gridding and Load Balancing contains further details. +See Grid Creation for grids are created, i.e. how the BoxArray on which MultiFabs will be built is defined at each level. -See Load Balancing for the strategies AMReX supports for distributing +See Load Balancing for the strategies AMReX supports for distributing grids to MPI ranks, i.e. defining the DistributionMapping with which MultiFabs at that level will be built.

    When running on multicore machines with OpenMP, we can also control the distribution of work by setting the size of grid tiles (by defining fabarray.mfiter_tile_size). We can also specify the strategy for assigning tiles to OpenMP threads. -See MFIter with Tiling for more about tiling.

    +See MFIter with Tiling for more about tiling.

    diff --git a/docs_html/TimeStep.html b/docs_html/TimeStep.html index f18ef7116..ab1088f51 100644 --- a/docs_html/TimeStep.html +++ b/docs_html/TimeStep.html @@ -1,25 +1,23 @@ + + - Time Step — incflo 24.10-dev documentation + Time Step — incflo 24.11-dev documentation - + - - - - - - - - + + + + + + @@ -38,9 +36,6 @@ incflo -
    - 24.10-dev -
    diff --git a/docs_html/_sources/InputsAlgorithm.rst.txt b/docs_html/_sources/InputsAlgorithm.rst.txt index f37131138..ae3ba8215 100644 --- a/docs_html/_sources/InputsAlgorithm.rst.txt +++ b/docs_html/_sources/InputsAlgorithm.rst.txt @@ -28,6 +28,9 @@ The following inputs must be preceded by "incflo." +----------------------+-----------------------------------------------------------------------+-------------+--------------+ | mu_s | scalar diffusivity | Real(s) | 0.0 | +----------------------+-----------------------------------------------------------------------+-------------+--------------+ +| use_cc_proj | Use cell-centered rather than nodal pressure; this changes the | bool | false | +| | which approximate projection we use | | | ++----------------------+-----------------------------------------------------------------------+-------------+--------------+ | use_tensor_solve | In velocity solve, use multicomponent :math:`\nabla \cdot \tau` | bool | true | | | otherwise use separate solves for each velocity component | | | +----------------------+-----------------------------------------------------------------------+-------------+--------------+ diff --git a/docs_html/_static/css/badge_only.css b/docs_html/_static/css/badge_only.css index c718cee44..88ba55b96 100644 --- a/docs_html/_static/css/badge_only.css +++ b/docs_html/_static/css/badge_only.css @@ -1 +1 @@ -.clearfix{*zoom:1}.clearfix:after,.clearfix:before{display:table;content:""}.clearfix:after{clear:both}@font-face{font-family:FontAwesome;font-style:normal;font-weight:400;src:url(fonts/fontawesome-webfont.eot?674f50d287a8c48dc19ba404d20fe713?#iefix) format("embedded-opentype"),url(fonts/fontawesome-webfont.woff2?af7ae505a9eed503f8b8e6982036873e) format("woff2"),url(fonts/fontawesome-webfont.woff?fee66e712a8a08eef5805a46892932ad) format("woff"),url(fonts/fontawesome-webfont.ttf?b06871f281fee6b241d60582ae9369b9) 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languagesHTML = ` +
    +
    Languages
    + ${config.projects.translations + .map( + (translation) => ` +
    + ${translation.language.code} +
    + `, + ) + .join("\n")} +
    + `; + return languagesHTML; + } + + function renderVersions(config) { + if (!config.versions.active.length) { + return ""; + } + const versionsHTML = ` +
    +
    Versions
    + ${config.versions.active + .map( + (version) => ` +
    + ${version.slug} +
    + `, + ) + .join("\n")} +
    + `; + return versionsHTML; + } + + function renderDownloads(config) { + if (!Object.keys(config.versions.current.downloads).length) { + return ""; + } + const downloadsNameDisplay = { + pdf: "PDF", + epub: "Epub", + htmlzip: "HTML", + }; + + const downloadsHTML = ` +
    +
    Downloads
    + ${Object.entries(config.versions.current.downloads) + .map( + ([name, url]) => ` +
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    + + Read the Docs + v: ${config.versions.current.slug} + + +
    +
    + ${renderLanguages(config)} + ${renderVersions(config)} + ${renderDownloads(config)} +
    +
    On Read the Docs
    +
    + Project Home +
    +
    + Builds +
    +
    + Downloads +
    +
    +
    +
    Search
    +
    + + + +
    +
    +
    + + Hosted by Read the Docs + +
    +
    + `; + + // Inject the generated flyout into the body HTML element. + document.body.insertAdjacentHTML("beforeend", flyout); + + // Trigger the Read the Docs Addons Search modal when clicking on the "Search docs" input from inside the flyout. + document + .querySelector("#flyout-search-form") + .addEventListener("focusin", () => { + const event = new CustomEvent("readthedocs-search-show"); + document.dispatchEvent(event); + }); + }) +} + +if (themeLanguageSelector || themeVersionSelector) { + function onSelectorSwitch(event) { + const option = event.target.selectedIndex; + const item = event.target.options[option]; + window.location.href = item.dataset.url; + } + + document.addEventListener("readthedocs-addons-data-ready", function (event) { + const config = event.detail.data(); + + const versionSwitch = document.querySelector( + "div.switch-menus > div.version-switch", + ); + if (themeVersionSelector) { + let versions = config.versions.active; + if (config.versions.current.hidden || config.versions.current.type === "external") { + versions.unshift(config.versions.current); + } + const versionSelect = ` + + `; + + versionSwitch.innerHTML = versionSelect; + versionSwitch.firstElementChild.addEventListener("change", onSelectorSwitch); + } + + const languageSwitch = document.querySelector( + "div.switch-menus > div.language-switch", + ); + + if (themeLanguageSelector) { + if (config.projects.translations.length) { + // Add the current language to the options on the selector + let languages = config.projects.translations.concat( + config.projects.current, + ); + languages = languages.sort((a, b) => + a.language.name.localeCompare(b.language.name), + ); + + const languageSelect = ` + + `; + + languageSwitch.innerHTML = languageSelect; + languageSwitch.firstElementChild.addEventListener("change", onSelectorSwitch); + } + else { + languageSwitch.remove(); + } + } + }); +} + +document.addEventListener("readthedocs-addons-data-ready", function (event) { + // Trigger the Read the Docs Addons Search modal when clicking on "Search docs" input from the topnav. + document + .querySelector("[role='search'] input") + .addEventListener("focusin", () => { + const event = new CustomEvent("readthedocs-search-show"); + document.dispatchEvent(event); + }); +}); \ No newline at end of file diff --git a/docs_html/genindex.html b/docs_html/genindex.html index 6ddd5a1f3..fc3c0d5d3 100644 --- a/docs_html/genindex.html +++ b/docs_html/genindex.html @@ -1,23 +1,21 @@ + + - Index — incflo 24.10-dev documentation + Index — incflo 24.11-dev documentation - + - - - - - - - + + + + + @@ -34,9 +32,6 @@ incflo -
    - 24.10-dev -
    diff --git a/docs_html/index.html b/docs_html/index.html index a2e2d47fa..876884a92 100644 --- a/docs_html/index.html +++ b/docs_html/index.html @@ -1,25 +1,23 @@ + + - Welcome to incflo’s documentation! — incflo 24.10-dev documentation + Welcome to incflo’s documentation! — incflo 24.11-dev documentation - + - - - - - - - - + + + + + + @@ -37,9 +35,6 @@ incflo -
    - 24.10-dev -
    diff --git a/docs_html/objects.inv b/docs_html/objects.inv index 81af64dded57812f8fc9dd35a93d47f87a7ee65a..c29125734d1b6239f0c51c2f7e7d892b0a87d6c5 100644 GIT binary patch delta 12 TcmdnQzKMN;9i!n!`(kDQ8+!xU delta 12 TcmdnQzKMN;9izcU`(kDQ8+HTO diff --git a/docs_html/search.html b/docs_html/search.html index dca119a0e..4fa9d49f4 100644 --- a/docs_html/search.html +++ b/docs_html/search.html @@ -1,24 +1,22 @@ + + - Search — incflo 24.10-dev documentation + Search — incflo 24.11-dev documentation - + - - - - - - - + + + + + @@ -37,9 +35,6 @@ incflo -
    - 24.10-dev -
    diff --git a/docs_html/searchindex.js b/docs_html/searchindex.js index 90acceb18..fc82e4091 100644 --- a/docs_html/searchindex.js +++ b/docs_html/searchindex.js @@ -1 +1 @@ -Search.setIndex({"alltitles": {"Algorithm Options": [[5, null]], "Building AMReX": [[4, "building-amrex"]], "Building incflo": [[4, "building-incflo"]], "Building incflo for Summit (OLCF)": [[4, "building-incflo-for-summit-olcf"]], "Building with CMake": [[4, "building-with-cmake"]], "Building with GNU Make": [[4, "building-with-gnu-make"]], "Checkpoint/Restart": [[6, null]], "Contents:": [[18, null]], "Debugging": [[0, null]], "Downloading the code": [[4, "downloading-the-code"]], "Embedded Boundaries": [[1, null]], "Few more notes on building incflo": [[4, "few-more-notes-on-building-incflo"]], "Fluid Equations": [[2, "fluid-equations"]], "Fluid Variables": [[2, null]], "Getting Started": [[4, null]], "Godunov Methods": [[17, "godunov-methods"]], "Gridding and Load Balancing": [[8, null], [16, null]], 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