bibliography.bib

%-  BibTeX "database" file

%-  bibliography.bib ~~
%
%   This is based on the one our group used for the eScience 2017 paper.
%
%                                                   ~~ last updated 18 Jan 2019

@inproceedings{cug-2016,
    title     = {Executing dynamic heterogeneous workloads on {Blue Waters} with {RADICAL-P}ilot},
    author    = {Mark Santcroos and Ralph Castain and Andre Merzky and Iain Bethune and Shantenu Jha},
    booktitle = {Cray User Group 2016},
    year      = {2016},
    pages={1--14}
}
@InProceedings{castain05:_open_rte,
  author={R. H. Castain and T. S. Woodall and D. J. Daniel and J. M. Squyres and B. Barrett and G .E. Fagg},
  title={The Open Run-Time Environment ({OpenRTE}): A Transparent Multi-Cluster Environment for High-Performance Computing},
  booktitle    = {Proc. 12th European PVM/MPI Users' Group Meeting},
  year	       = 2005,
  pages = {225--232}
}

@techreport{Alice1995,
  title={ALICE Technical Proposal for A Large Ion Collider Experiment at the {CERN LHC}},
  year={1995},
  institution={CERN/LHCC/95-71}
}

@online{oral2013olcf,
  title={{OLCF}’s 1 {TB}/s, next-generation lustre file system},
  author={Oral, Sarp and Dillow, David A and Fuller, Douglas and Hill, Jason and Leverman, Dustin and Vazhkudai, Sudharshan S and Wang, Feiyi and Kim, Youngjae and Rogers, James and Simmons, James and others},
  booktitle={Proc. {CUG}},
  year={2013}
}

@inproceedings{titan,
  Author = {Bland, Arthur S. and Wells, Jack C. and Messer, Otis E. and Hernandez, Oscar R. and Rogers, James H.},
  Booktitle = {Proc. {CUG}},
  Title = {Titan: Early experience with the {Cray XK6 at Oak Ridge National Laboratory}},
  Year = {2012}
}

@misc{top500,
  Author = {Jack Dongarra and Hans Meuer and Erich Strohmaier},
  Howpublished = {\url{http://www.top500.org}},
  Title = {Top500 Supercomputing Sites},
  Year = {2016}
}

@misc{lustre,
  Author = {Intel Inc.},
  Howpublished = {\url{http://lustre.org/getting-started-with-lustre/}},
  Title = {Lustre File System, Getting Started with Lustre},
  Year = {2016}
}

@techreport{Pacini2006,
  author={Pacini, F and Maraschini, A},
  title={Job description language ({JDL}) attributes specification},
  year={2006},
  institution={Tech. Rep. 590869}
}

@article{Sfiligoi2008,
  author={Sfiligoi, I},
  journal={J. Phys.: Conf. Ser.},
  number={6},
  pages={062044},
  title={glidein{WMS}—a generic pilot-based workload management system},
  volume={119},
  year={2008}
}

@article{Aad:2008,
  author={Aad, G. and others},
  title={The {ATLAS} Experiment at the {CERN} Large Hadron Collider},
  collaboration={ATLAS},
  journal={JINST},
  volume={3},
  year={2008},
  pages={S08003},
}

@article{Bagnasco2004,
  author={Bagnasco, S and Betev, L and Buncic, P and Carminati, F and Furano, F and Grigoras, A and Grigoras, C and Lorenzo, P Mendez and Peters, A J and Saiz, P},
  journal={J. Phys.: Conf. Ser.},
  pages={062004},
  title={The {ALICE} Workload Management System: Status before the real data taking},
  volume={219},
  number={6},
  year={2010}
}

@article{Paterson2010,
  author={Paterson, Stuart and Closier, Joel and Team, the Lhcb Dirac},
  title={Performance of combined production and analysis {WMS} in {DIRAC}},
  journal={J. Phys.: Conf. Ser.},
  pages={072015},
  volume={219},
  number={7},
  year={2010}
}


@article{Casajus2010,
  author={Adrian Casajus and Ricardo Graciani and Stuart Paterson and Andrei Tsaregorodtsev and the Lhcb Dirac Team},
  title={{DIRAC} pilot framework and the {DIRAC} Workload Management System},
  journal={J. Phys.: Conf. Ser.},
  volume={219},
  number={6},
  pages={062049},
  year={2010},
}

@article{Tsaregorodtsev2006,
  author={Tsaregorodtsev, Andrei and Brook, Nicholas and Sanchez, Manuel and   Smith, Andrew Cameron and Stokes-Rees, Ian and Casajus, Adria and Charpentier, Philippe and Closier, Joel and Garonne, Vincent and Graciani, Ricardo and Kuznetsov, Gennady and Paterson, Stuart and Saborido Silva, Juan},
  title={{DIRAC}, the {LHCb} Data Production and Distributed Analysis ystem},
  year={2006},
  reportNumber={LHCb-TALK-2006-014},
}

@inproceedings{Tsaregorodtsev2004,
  author = {Tsaregorodtsev, Andrei and Garonne, Vincent and Stokes-Rees, Ian},
  title = {{DIRAC}: A Scalable Lightweight Architecture for High Throughput Computing},
  booktitle = {Proc. 5th {IEEE/ACM} IWGC},
  series = {GRID '04},
  year = {2004},
  pages = {19--25},
}


@article{Saiz2003,
  author  = {Pablo Saiz and
         Predrag Buncic and
         Andreas J. Peters},
  title   = {{AliEn} Resource Brokers},
  journal   = {CoRR},
  volume  = {cs.DC/0306068},
  year    = {2003},
}


@article{Bagnasco2010,
  author    = {Bagnasco, S and Betev, L and Buncic, P and Carminati, F
             and Furano, F and Grigoras, A and Grigoras, C and
             Mendez-Lorenzo, P and Peters, A J and Saiz, P},
  title     = {The {ALICE} workload management system: Status before the
           real data taking},
  journal     = {J. Phys.: Conf. Ser.},
  volume    = 219,
  pages     = {062004. 6p},
  year      = 2010,
}


@inproceedings{jones2008atlas,
  title={The {ATLAS} computing model},
  author={Jones, Roger and Barberis, Dario},
  booktitle={J. Phys.: Conf. Ser.},
  volume={119},
  issue={7},
  pages={072020},
  year={2008}
}

@article{McClatechey2003,
  author  = {Richard McClatchey and
         Predrag Buncic and
         David Manset and
         Tamas Hauer and
         Florida Estrella and
         Pablo Saiz and
         Dmitri Rogulin},
  title   = {The {MammoGrid} Project Grids Architecture},
  journal   = {MOAT005},
  volume  = {cs.DC/0306095},
  year    = {2003},
}

@article{GPCALMA,
  author  = {Cerello, P and Cheram, S and Lopez Torres, E and GPCALMA Project and Alice Collaboration},
  title   = {Use of {HEP} software for medical applications},
  journal   = {MOCT007},
}

@book{foster2003grid,
  title={The Grid 2: Blueprint for a new computing infrastructure},
  author={Foster, Ian and Kesselman, Carl},
  year={2003},
  publisher={Elsevier},
  address={Amsterdam, Netherlands}
}

@article{Maeno2011,
  author={Maeno, T},
  title={Overview of {ATLAS PanDA} workload management},
  journal={J. Phys.: Conf. Ser},
  volume={331},
  number={7},
  pages={072024},
  year={2011}
}

@article{Nilsson2010,
  author={Nilsson P.},
  title={The {ATLAS PanDA} Pilot in Operation},
  journal={Proc. 18th CHEP},
  year={2010}
}

@article{SAGA,
  title={The {SAGA} Framework website \url{http://saga-project.github.io}}
}

@inproceedings{garonne2012atlas,
  title={The atlas distributed data management project: Past and future},
  author={Garonne, Vincent and Stewart, Graeme A and Lassnig, Mario and Molfetas, Angelos and Barisits, Martin and Beermann, Thomas and Nairz, Armin and Goossens, Luc and Megino, Fernando Barreiro and Serfon, Cedric and others},
  booktitle={J. Phys.: Conf. Ser.},
  volume={396},
  issue={3},
  pages={032045},
  year={2012},
}

@inproceedings{caballero2012autopyfactory,
  title={{AutoPyFactory}: a scalable flexible pilot factory implementation},
  author={Caballero, J and Hover, J and Love, P and Stewart, GA},
  booktitle={J. Phys.: Conf. Ser.},
  volume={396},
  issue={3},
  pages={032016},
  year={2012},
}

@article{frey2002condor,
  title={{Condor-G}: A computation management agent for multi-institutional grids},
  author={Frey, James and Tannenbaum, Todd and Livny, Miron and Foster, Ian and Tuecke, Steven},
  journal={Cluster Computing},
  volume={5},
  number={3},
  pages={237--246},
  year={2002},
}

@inproceedings{klimentov2011atlas,
  title={The {ATLAS PanDA} Monitoring System and its Evolution},
  author={Klimentov, A and Nevski, P and Potekhin, M and Wenaus, T},
  booktitle={J. Phys.: Conf. Ser.},
  volume={331},
  issue={7},
  pages={072058},
  year={2011},
}

@inproceedings{borodin2015scaling,
  title={Scaling up {ATLAS} production system for the {LHC} Run 2 and beyond: project {ProdSys2}},
  author={Borodin, Mikhail and De, K and Garcia, J and Golubkov, Dmitry and Klimentov, A and Maeno, T and Vaniachine, A and others},
  booktitle={J. Phys.: Conf. Ser.},
  volume={664},
  issue={6},
  pages={062005},
  year={2015},
}

@online{borodin2015unified,
  title={Unified System for Processing Real and Simulated Data in the {ATLAS} Experiment},
  author={Borodin, Mikhail and De, Kaushik and Navarro, Jose Garcia and Golubkov, Dmitry and Klimentov, Alexei and Maeno, Tadashi and South, David and others},
  year={2015},
  archivePrefix={arXiv},
  eprint={1508.07174},
}

@online{de2013delphes,
  title={{DELPHES} 3, A modular framework for fast simulation of a generic collider experiment},
  author={De Favereau, J and Delaere, C and Demin, P and Giammanco, A and Lema{\^\i}tre, V and Mertens, A and Selvaggi, M},
  year={2013},
  archivePrefix={arXiv},
  eprint={1307.6346},
}

@inproceedings{rimoldi2006atlas,
  title={Atlas Detector Simulation: Status and Outlook},
  author={Rimoldi, A and Dell'Acqua, A and di Simone, A and Gallas, M and Nairz, A and Boudreau, J and Tsulaia, V and Costanzo, D},
  booktitle={Astroparticle, Particle and Space Physics, Detectors and Medical Physics Applications},
  volume={1},
  pages={551--555},
  year={2006}
}

@phdthesis{ritsch2014atlas,
  title={{ATLAS} Detector Simulation in the Integrated Simulation Framework applied to the {W Boson} Mass Measurement},
  author={Ritsch, Elmar},
  year={2014},
  school={Innsbruck U.}
}

@article{sjostrand2006pythia,
  title={PYTHIA 6.4 physics and manual},
  author={Sj{\"o}strand, Torbj{\"o}rn and Mrenna, Stephen and Skands, Peter},
  journal={Journal of High Energy Physics},
  volume={2006},
  number={05},
  pages={026},
  year={2006},
}

@article{corcella2001herwig,
  title={{HERWIG} 6: an event generator for hadron emission reactions with interfering gluons (including supersymmetric processes)},
  author={Corcella, Gennaro and Knowles, Ian G and Marchesini, Giuseppe and Moretti, Stefano and Odagiri, Kosuke and Richardson, Peter and Seymour, Michael H and Webber, Bryan R},
  journal={Journal of High Energy Physics},
  volume={2001},
  number={01},
  pages={010},
  year={2001},
}

@article{agostinelli2003geant4,
  title={{GEANT4—a} simulation toolkit},
  author={Agostinelli, Sea and Allison, John and Amako, K al and Apostolakis, J and Araujo, H and Arce, P and Asai, M and Axen, D and Banerjee, S and Barrand, G and others},
  journal={Nuclear instruments and methods in physics research section A: Accelerators, Spectrometers, Detectors and Associated Equipment},
  volume={506},
  number={3},
  pages={250--303},
  year={2003},
}

@article{aad2010atlas,
  title={The {ATLAS} simulation infrastructure},
  author={Aad, Georges and Abbott, B and Abdallah, J and Abdelalim, AA and Abdesselam, A and Abdinov, O and Abi, B and Abolins, M and Abramowicz, H and Abreu, H and others},
  journal={The European Physical Journal C},
  volume={70},
  number={3},
  pages={823--874},
  year={2010},
}

@inproceedings{marco2009glite,
  title={The {G-LITE} workload management system},
  author={Marco, Cecchi and Fabio, Capannini and Alvise, Dorigo and Antonia, Ghiselli and Francesco, Giacomini and Alessandro, Maraschini and Moreno, Marzolla and Salvatore, Monforte and Luca, Petronzio and Francesco, Prelz},
  booktitle={International Conference on Grid and Pervasive Computing},
  pages={256--268},
  year={2009},
}

@inproceedings{sfiligoi2008glideinwms,
  title={glideinWMS—a generic pilot-based workload management system},
  author={Sfiligoi, Igor},
  booktitle={J. Phys.: Conf. Ser.},
  volume={119},
  issue={6},
  pages={062044},
  year={2008}
}

@inproceedings{maeno2014evolution,
  title={Evolution of the {ATLAS PanDA} workload management system for exascale computational science},
  author={Maeno, T and De, K and Klimentov, A and Nilsson, P and Oleynik, D and Panitkin, S and Petrosyan, A and Schovancova, J and Vaniachine, A and Wenaus, T and others},
  booktitle={J. Phys.: Conf. Ser.},
  volume={513},
  issue={3},
  pages={032062},
  year={2014}
}

@article{thain2005distributed,
  title={Distributed computing in practice: the {Condor} experience},
  author={Thain, Douglas and Tannenbaum, Todd and Livny, Miron},
  journal={Concurrency and computation: practice and experience},
  volume={17},
  number={2-4},
  pages={323--356},
  year={2005}
}

@inproceedings{crooks2012multi,
  title={Multi-core job submission and grid resource scheduling for {ATLAS AthenaMP}},
  author={Crooks, D and Calafiura, P and Harrington, R and Jha, M and Maeno, T and Purdie, S and Severini, H and Skipsey, S and Tsulaia, V and Walker, R and others},
  booktitle={J. Phys.: Conf. Ser.},
  volume={396},
  issue={3},
  pages={032115},
  year={2012}
}

@online{radical-saga_url,
  author={{RADICAL} Team},
  year={2017},
  title={{RADICAL-SAGA} Software Toolkit},
  url={https://github.com/radical-cybertools/radical-saga},
  lastaccessed={March 21, 2017},
}

@online{panda-wiki_url,
  author={ATLAS PanDA Team},
  year={2017},
  title={The {PanDA} Production and Distributed Analysis System},
  url={https://twiki.cern.ch/twiki/bin/view/PanDA/PanDA},
  lastaccessed={March 25, 2017},
}

@misc{goodale2008simple,
  title={A Simple {API} for Grid Applications ({SAGA}). {OGF} Document Series 90},
  author={Goodale, T and Jha, S and Kaiser, H and Kielmann, T and al Kleijer, P and Merzky, A and Shalf, J and Smith, C},
  year={2008}
}

@inproceedings{calafiura2015atlas,
  title={The {ATLAS} Event Service: A new approach to event processing},
  author={Calafiura, Paolo and De, K and Guan, W and Maeno, T and Nilsson, P and Oleynik, D and Panitkin, S and Tsulaia, V and Van Gemmeren, P and Wenaus, T},
  booktitle={J. Phys.: Conf. Ser.},
  volume={664},
  issue={6},
  pages={062065},
  year={2015}
}

@inproceedings{maeno2011overview,
  title={Overview of {ATLAS PanDA} workload management},
  author={Maeno, Tadashi and De, K and Wenaus, T and Nilsson, P and Stewart, GA and Walker, R and Stradling, A and Caballero, J and Potekhin, M and Smith, D and others},
  booktitle={J. Phys.: Conf. Ser.},
  volume={331},
  issue={7},
  pages={072024},
  year={2011}
}

@inproceedings{nilsson2011atlas,
  title={The {ATLAS PanDA} pilot in operation},
  author={Nilsson, P and Caballero, J and De, K and Maeno, T and Stradling, A and Wenaus, T and Atlas Collaboration and others},
  booktitle={J. Phys.: Conf. Ser.},
  volume={331},
  issue={6},
  pages={062040},
  year={2011}
}

@techreport{barker2016us,
  title={High Performance Computing Facility Operational Assessment 2015: Oak Ridge Leadership Computing Facility},
  author={Ashley D. Barker and  David E. Bernholdt and Arthur S. Bland and  Jeff D. Gary and James J. Hack and Stephen T. McNally and James H. Rogers and Brian Smith and T.P. Straatsma  and Sreenivas R. Sukumar  and Kevin G. Thach  and Suzy Tichenor  and Sudharshan S. Vazhkudai  and Jack C. Wells},
  number={ORNL/SPR--2016/110},
  url={http://www.osti.gov/scitech/servlets/purl/1324094}, DOI={10.2172/1324094},
  year={2016},
  month={Mar},
  institution={Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States). Oak Ridge Leadership Computing Facility (OLCF)}
}

@online{maui_backfill_url,
  author={Adaptive Computing Enterprises, Inc},
  year={2014},
  title={Maui Scheduler Administrator's Guide: Backfill},
  url={http://docs.adaptivecomputing.com/maui/8.2backfill.php},
  lastaccessed={Apr 2, 2017},
}

@online{hepcloud,
  author = {Gabriele Garzoglio and Burt Holzman},
  year={2016},
  title = {{HEP C}loud: How to add thousands of computers to your data center},
  url =  {https://goo.gl/IP8Jqi},
  lastaccessed={Apr 3, 2017},
}

@online{googlehep,
  author = "Paul Rossman",
  year={2016},
  title = "Google {C}loud, {HEP C}loud and probing the nature of {N}ature",
  url={https://goo.gl/MLKjsv},
  lastaccessed={Apr 3, 2017},
}


@online{foap-url,
  author={Argonne National Laboratory, Argonne National Laboratory},
  year={2017},
  title={Future Online Analysis Platform: BUILDING A RESEARCH ROADMAP FOR FUTURE SCIENCE PLATFORMS},
  url={https://press3.mcs.anl.gov/futureplatform/},
  lastaccessed={Apr 3, 2017},
}

@online{bw-sucks,
  author = "XDMoD - Blue Waters",
  title = "XDMoD - Blue Waters",
  url={http://xdmod.ncsa.illinois.edu/\#tg_usage:statistic_Jobs_none_utilization},
  year={2017},
  lastaccessed={Apr 3, 2017},
}

@techreport{barreiro2016panda,
  title={{PanDA} for {ATLAS} Distributed Computing in the Next Decade},
  author={Barreiro Megino, Fernando Harald and Padolski, Siarhei and Oleynik, Danila and Maeno, Tadashi and Panitkin, Sergey and De, Kaushik and Wenaus, Torre and Klimentov, Alexei and Nilsson, Paul},
  year={2016},
  number={ATL-COM-SOFT-2016-049},
  institution={The ATLAS collaboration},
}

@inproceedings{belyaev2015integration,
  title={Integration of Russian Tier-1 Grid Center with High Performance Computers at {NRC-KI} for {LHC} experiments and beyond {HENP}},
  author={Belyaev, A and Berezhnaya, A and Betev, L and Buncic, P and De, K and Drizhuk, D and Klimentov, A and Lazin, Y and Lyalin, I and Mashinistov, R and others},
  booktitle={J. Phys.: Conf. Ser.},
  volume={664},
  issue={9},
  pages={092018},
  year={2015}
}

@article{foster2001anatomy,
  title={The anatomy of the grid: Enabling scalable virtual organizations},
  author={Foster, Ian and Kesselman, Carl and Tuecke, Steven},
  journal={International journal of high performance computing applications},
  volume={15},
  number={3},
  pages={200--222},
  year={2001}
}

@inproceedings{Babich:2010:PQL:1884643.1884695,
  author = {Babich, Ronald and Clark, Michael A. and Jo\'{o}, B\'{a}lint},
  title = {Parallelizing the QUDA Library for Multi-GPU Calculations in Lattice Quantum Chromodynamics},
  booktitle = {Proceedings of the 2010 ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis},
  series = {SC '10},
  year = {2010},
  isbn = {978-1-4244-7559-9},
  pages = {1--11},
  numpages = {11},
  url = {https://doi.org/10.1109/SC.2010.40},
  doi = {10.1109/SC.2010.40},
  acmid = {1884695},
  publisher = {IEEE Computer Society},
  address = {Washington, DC, USA},
}

% nEDM
@article{Sakharov:1967dj,
      author         = "Sakharov, A. D.",
      title          = "{Violation of CP Invariance, C asymmetry, and baryon
                        asymmetry of the universe}",
      journal        = "Pisma Zh. Eksp. Teor. Fiz.",
      volume         = "5",
      year           = "1967",
      pages          = "32-35",
      doi            = "10.1070/PU1991v034n05ABEH002497",
      note           = "[Usp. Fiz. Nauk161,no.5,61(1991)]",
      SLACcitation   = "%%CITATION = ZFPRA,5,32;%%"
}


@article{0954-3899-36-10-104002,
  author={S K Lamoreaux and R Golub},
  title={Experimental searches for the neutron electric dipole moment},
  journal={Journal of Physics G: Nuclear and Particle Physics},
  volume={36},
  number={10},
  pages={104002},
  url={http://stacks.iop.org/0954-3899/36/i=10/a=104002},
  year={2009},
  abstract={The possible existence of a neutron electric dipole (EDM) was put forward as an experimental question in 1949, 60 years ago, and still remains an outstanding question in modern physics. A review of the technical innovations that allowed for improving the experimental limit by nearly eight orders of magnitude (approximately a decade per decade) will be presented, along with a discussion of the prospects for further improvement.}
}


% GridPP
@article{0954-3899-32-1-N01,
  author={The GridPP Collaboration  and P J W Faulkner and L S Lowe and C L A Tan and P M Watkins and D S Bailey and T A Barrass and N H
Brook and R J H Croft and M P Kelly and C K Mackay and S Metson and O J E Maroney and D M Newbold and F F Wilson and P R Hobson and A
Khan and P Kyberd and J J Nebrensky and M Bly and C Brew and S Burke and R Byrom and J Coles and L A Cornwall and A Djaoui and L Field and S M
Fisher and G T Folkes and N I Geddes and J C Gordon and S J C Hicks and J G Jensen and G Johnson and D Kant and D P Kelsey and G
Kuznetsov and J Leake and R P Middleton and G N Patrick and G Prassas and B J Saunders and D Ross and R A Sansum and T Shah and B
Strong and O Synge and R Tam and M Thorpe and S Traylen and J F Wheeler and N G H White and A J Wilson and I Antcheva and E Artiaga and J
Beringer and I G Bird and J Casey and A J Cass and R Chytracek and M V Gallas Torreira and J Generowicz and M Girone and G Govi and F
Harris and M Heikkurinen and A Horvath and E Knezo and M Litmaath and M Lubeck and J Moscicki and I Neilson and E Poinsignon and W
Pokorski and A Ribon and Z Sekera and D H Smith and W L Tomlin and J E van Eldik and J Wojcieszuk and F M Brochu and S Das and K
Harrison and M Hayes and J C Hill and C G Lester and M J Palmer and M A Parker and M Nelson and M R Whalley and E W N Glover and P
Anderson and P J Clark and A D Earl and A Holt and A Jackson and B Joo and R D Kenway and C M Maynard and J Perry and L Smith and S Thorn and A
S Trew and W H Bell and M Burgon-Lyon and D G Cameron and A T Doyle and A Flavell and S J Hanlon and D J Martin and G McCance and A P
Millar and C Nicholson and S K Paterson and A Pickford and P Soler and F Speirs and R St Denis and A S Thompson and D Britton and W
Cameron and D Colling and G Davies and P Dornan and U Egede and K Georgiou and P Lewis and B MacEvoy and S Marr and J Martyniak and H
Tallini and S Wakefield and R Walker and I A Bertram and E Bouhova-Thacker and D Evans and R C W Henderson and R W L Jones and P
Love and S Downing and M P George and A C Irving and C McNeile and Z Sroczynski and M Tobin and A J Washbrook and R J Barlow and S
Dallison and G Fairey and A Forti and R E Hughes-Jones and M A S Jones and S Kaushal and R Marshall and A McNab and S Salih and J C
Werner and V Bartsch and C Cioffi and P Gronbech and N Harnew and J F Harris and B T Huffman and M Leslie and I McArthur and R Newman and A
Soroko and I Stokes-Rees and S Stonjek and J Tseng and D Waters and G Wilkinson and T R Arter and R A Cordenonsi and A S Datta and T
Hartin and S L Lloyd and A J Martin and S E Pearce and C J Williams and M Gardner and S George and B J Green and S Johal and G Rybkine and J
A Strong and P Teixeira-Dias and P Hodgson and M Robinson and D R Tovey and N J C Spooner and C R Allton and W Armour and P Clarke and P
Mealor and D Waters and B Waugh and B West},
  title={GridPP: development of the UK computing Grid for particle physics},
  journal={Journal of Physics G: Nuclear and Particle Physics},
  volume={32},
  number={1},
  pages={N1},
  url={http://stacks.iop.org/0954-3899/32/i=1/a=N01},
  year={2006},
  }


% OSG
@article{1742-6596-78-1-012057,
  author={Ruth Pordes and Don Petravick and Bill Kramer and Doug Olson and Miron Livny and Alain Roy and Paul Avery and Kent
Blackburn and Torre Wenaus and Frank Würthwein and Ian Foster and Rob Gardner and Mike Wilde and Alan Blatecky and John
McGee and Rob Quick},
  title={The open science grid},
  journal={Journal of Physics: Conference Series},
  volume={78},
  number={1},
  pages={012057},
  url={http://stacks.iop.org/1742-6596/78/i=1/a=012057},
  year={2007},
  }

@article{GBOOST,
    author = {Yung, Ling Sing and Yang, Can and Wan, Xiang and Yu, Weichuan},
    title = "{GBOOST: a GPU-based tool for detecting gene?~@~Sgene interactions in genome?~@~Swide case control studies}",
    journal = {Bioinformatics},
    volume = {27},
    number = {9},
    pages = {1309-1310},
    year = {2011},
    month = {03},
    issn = {1367-4803},
    doi = {10.1093/bioinformatics/btr114},
    url = {https://doi.org/10.1093/bioinformatics/btr114},
    eprint = {http://oup.prod.sis.lan/bioinformatics/article-pdf/27/9/1309/16902475/btr114.pdf},
}

%MD
@article{Brooks2009CHARMM,
   added-at = {2016-01-25T23:09:25.000+0100},
  author = {Brooks, B. R. and Brooks, C. L. and Mackerell, A. D. and Nilsson, L. and Petrella, R. J. and Roux, B. and Won, Y. and Archontis, G. and Bartels, C. and Boresch, S. and Caflisch, A. and Caves, L. and Cui, Q. and Dinner, A. R. and Feig, M. and Fischer, S. and Gao, J. and Hodoscek, M. and Im, W. and Kuczera, K. and Lazaridis, T. and Ma, J. and Ovchinnikov, V. and Paci, E. and Pastor, R. W. and Post, C. B. and Pu, J. Z. and Schaefer, M. and Tidor, B. and Venable, R. M. and Woodcock, H. L. and Wu, X. and Yang, W. and York, D. M. and Karplus, M.},
  biburl = {https://www.bibsonomy.org/bibtex/2b1230baab4b2d8720980dfeb1a9fa22d/salotz},
  description = {CHARMM: The biomolecular simulation program - Brooks - 2009 - Journal of Computational Chemistry - Wiley Online Library},
  doi = {10.1002/jcc.21287},
  interhash = {d893d73d512bbe29ae7a15724a3d080e},
  intrahash = {b1230baab4b2d8720980dfeb1a9fa22d},
  issn = {1096-987X},
  journal = {Journal of Computational Chemistry},
  keywords = {charmm computational-biology molecular-dynamics software},
  number = 10,
  pages = {1545--1614},
  publisher = {Wiley Subscription Services, Inc., A Wiley Company},
  timestamp = {2016-01-25T23:09:25.000+0100},
  title = {CHARMM: The biomolecular simulation program},
  url = {http://dx.doi.org/10.1002/jcc.21287},
  volume = 30,
  year = 2009
}

% BlueBrain
@article{citeulike:472727,
    abstract = {{IBM's Blue Gene supercomputer allows a quantum leap in the level of detail at which the brain can be modelled. I argue that the time is right to begin assimilating the wealth of data that has been accumulated over the past century and start building biologically accurate models of the brain from first principles to aid our understanding of brain function and dysfunction.}},
    author = {Markram, Henry},
    citeulike-article-id = {472727},
    citeulike-linkout-0 = {http://dx.doi.org/10.1038/nrn1848},
    citeulike-linkout-1 = {http://dx.doi.org/10.1038/nrn1848},
    citeulike-linkout-2 = {http://view.ncbi.nlm.nih.gov/pubmed/16429124},
    citeulike-linkout-3 = {http://www.hubmed.org/display.cgi?uids=16429124},
    day = {01},
    doi = {10.1038/nrn1848},
    issn = {1471-003X},
    journal = {Nat Rev Neurosci},
    keywords = {connectionism-essay},
    month = feb,
    number = {2},
    pages = {153--160},
    pmid = {16429124},
    posted-at = {2009-05-15 00:34:06},
    priority = {2},
    publisher = {Nature Publishing Group},
    title = {{The Blue Brain Project}},
    url = {http://dx.doi.org/10.1038/nrn1848},
    volume = {7},
    year = {2006}
}

@article{Markram,
author = {Markram, Henry},
year = {2006},
month = {03},
pages = {153-60},
title = {The Blue Brain project},
volume = {7},
booktitle = {Nature reviews. Neuroscience}
}

% IceCube
@article{Halzen:2010yj,
      author         = "Halzen, Francis and Klein, Spencer R.",
      title          = "{IceCube: An Instrument for Neutrino Astronomy}",
      journal        = "Rev. Sci. Instrum.",
      volume         = "81",
      year           = "2010",
      pages          = "081101",
      doi            = "10.1063/1.3480478",
      eprint         = "1007.1247",
      archivePrefix  = "arXiv",
      primaryClass   = "astro-ph.HE",
      SLACcitation   = "%%CITATION = ARXIV:1007.1247;%%"
}

@article{Gazizov:2004va,
      author         = "Gazizov, Askhat and Kowalski, Marek P.",
      title          = "{ANIS: High energy neutrino generator for neutrino
                        telescopes}",
      journal        = "Comput. Phys. Commun.",
      volume         = "172",
      year           = "2005",
      pages          = "203-213",
      doi            = "10.1016/j.cpc.2005.03.113",
      eprint         = "astro-ph/0406439",
      archivePrefix  = "arXiv",
      primaryClass   = "astro-ph",
      reportNumber   = "DESY-04-101",
      SLACcitation   = "%%CITATION = ASTRO-PH/0406439;%%"
}

% GridFTP
@inproceedings{Allcock:2005:GSG:1105760.1105819,
 author = {Allcock, William and Bresnahan, John and Kettimuthu, Rajkumar and Link, Michael and Dumitrescu, Catalin and Raicu, Ioan and Foster, Ian},
 title = {The Globus Striped GridFTP Framework and Server},
 booktitle = {Proceedings of the 2005 ACM/IEEE Conference on Supercomputing},
 series = {SC '05},
 year = {2005},
 isbn = {1-59593-061-2},
 pages = {54--},
 url = {https://doi.org/10.1109/SC.2005.72},
 doi = {10.1109/SC.2005.72},
 acmid = {1105819},
 publisher = {IEEE Computer Society},
 address = {Washington, DC, USA},
}

@techreport{borodin2016atlas,
  title={ATLAS production system},
  author={Borodin, Mikhail and Padolski, Siarhei and Wenaus, Torre and Maeno, Tadashi and De, Kaushik and Golubkov, Dmitry and Mashinistov, Ruslan and Barreiro Megino, Fernando Harald and Klimentov, Alexei},
  year={2016},
  institution={ATL-COM-SOFT-2016-021}
}

@article{nilsson2008panda,
  title={The PanDA system in the Atlas experiment},
  author={Nilsson, Paul and Potekhin, Maxim and Maeno, Tadashi and Caballero, Jose and De, Kaushik and Wenaus, Torre},
  journal={PoS},
  pages={027},
  year={2008}
}

@inproceedings{anisenkov2014agis,
  title={AGIS: the ATLAS grid information system},
  author={Anisenkov, Alexey and Di Girolamo, A and Klimentov, A and Oleynik, D and Petrosyan, A and Atlas Collaboration and others},
  booktitle={Journal of Physics: Conference Series},
  volume={513},
  number={3},
  pages={032001},
  year={2014},
  organization={IOP Publishing}
}

@misc{Kubernetes,
  title = {Kubernetes web site},
  howpublished = {\url{https://kubernetes.io/}},
  note = {Accessed: 2019-01-18}
}

@misc{RH_OpenShift,
  title = {Red Hat OpenShift web site},
  howpublished = {\url{https://www.openshift.com}},
  note = {Accessed: 2019-01-18}
}

@online{titan_sched,
	author = {OLCF},
	title = {Titan Scheduling Policy},
	url={https://www.olcf.ornl.gov/for-users/system-user-guides/titan/running-jobs},
	year={2018},
	urldate = {2018-10-30}
}
@online{moab,
	author = {Adaptive Computing},
	title = {Adaptive Computing Administrator's Guide, 6.1.2},
	url={http://docs.adaptivecomputing.com/9-1-2/MWM/Moab-9.1.2.pdf},
	year={2018},
	urldate = {2018-10-30}
}
@online{titan_man,
	author = {OLCF},
	title = {Titan Scheduling Policy},
	url={https://www.olcf.ornl.gov/for-users/system-user-guides/titan},
	year={2018},
	urldate = {2018-10-30}
}

@article{osti_1086656,
    title = {Production Experiences with the Cray-Enabled TORQUE Resource
                Manager},
    author = {Ezell, Matthew A and Maxwell, Don E and Beer, David},
    doi = {},
    journal = {},
    number = {},
    volume = {},
    place = {United States},
    year = {2013},
    month = {1}
}