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_pkgdown.yml
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url: https://manlius.github.io/muxViz
home:
title: MuxViz - Visualization and Analysis of Multilayer Networks
description: Visualization and Analysis of Multilayer Networks.
template:
opengraph:
image:
src: man/figures/logo.png
alt: "MuxViz - Visualization and Analysis of Multilayer Networks"
twitter:
creator: "@manlius84"
site: "@ComuneLab"
card: summary
params:
bootswatch: sandstone
development:
mode: auto
reference:
- title: "Building multilayer networks"
desc: >
Functions for buiding multilayer networks and/or its characterising matrices,
and other basic functions
- contents:
- GetSampleMultiplex
- BuildExtendedEdgelistFromSupraAdjacencyMatrix
- BuildLayersTensor
- BuildSupraAdjacencyMatrixFromEdgeColoredMatrices
- BuildSupraAdjacencyMatrixFromExtendedEdgelist
- SupraAdjacencyToBlockTensor
- SupraAdjacencyToNetworkList
- SupraAdjacencyToNodesTensor
- buildMultilayerNetworkFromMuxvizFiles
- binarizeMatrix
- title: "Aggregation functions"
desc: "Obtaining aggregated networks from multilayes."
- contents:
- GetAggregateMatrix
- GetAggregateMatrixFromNetworkList
- GetAggregateMatrixFromSupraAdjacencyMatrix
- GetAggregateNetworkFromNetworkList
- GetAggregateNetworkFromSupraAdjacencyMatrix
- title: "Centralities"
desc: "Multilayer centralities."
- contents:
- GetMultiAuthCentrality
- GetMultiClosenessCentrality
- GetMultiDegree
- GetMultiDegreeSum
- GetMultiEigenvectorCentrality
- GetMultiHubCentrality
- GetMultiInDegree
- GetMultiInDegreeSum
- GetMultiInStrength
- GetMultiInStrengthSum
- GetMultiKCoreCentrality
- GetMultiKatzCentrality
- GetMultiOutDegree
- GetMultiOutDegreeSum
- GetMultiOutStrength
- GetMultiOutStrengthSum
- GetMultiPageRankCentrality
- GetMultiPathStatistics
- GetMultiRWCentrality
- GetMultiStrength
- GetMultiStrengthSum
- GetMultiplexityCentrality
- getVersatilityProfile
- title: "Mesoscale structures"
desc: >
Describing and anlysis the mescoscale structure of multilayer networks.
- contents:
- GetConnectedComponents
- GetGiantConnectedComponent
- GetGiantIntersectionComponent
- GetGiantIntersectionComponentFromNetworkList
- GetGiantViableComponent
- GetGiantViableComponentFromNetworkList
- GetMultilayerCommunities_Infomap
- GetMultiplexCommunities_Infomap
- GetMultilayerMotifs
- GetMultilayerMotifsFromNetworkList
- GetMonoplexTriads
- GetMultiplexTriads
- GetMultiplexTriadsFromNetworkList
- title: "Global Descriptors"
desc: ""
- contents:
- GetGlobalNumberTriangles
- GetAverageGlobalClustering
- GetAverageGlobalNodeOverlappingMatrix
- GetAverageGlobalOverlapping
- GetAverageGlobalOverlappingMatrix
- title: "Dynamics & Co."
desc: >
Describing, evaluating, and anlysis dynamics on multilayer networks.
- contents:
- GetLaplacianMatrix
- GetNormalizedLaplacianMatrix
- BuildSupraTransitionMatrixFromSupraAdjacencyMatrix
- BuildTransitionMatrixFromEdgeColoredMatrices
- BuildTransitionMatrixFromSingleLayer
- GetCoverageEvolutionMultilayer
- GetCoverageEvolutionEdgeColored
- GetCoverageEvolutionSingleLayer
- title: "Plotting"
desc: >
Plotting routines (documentation is poor, sorry).
- contents:
- plot_multiplex
- plot_multiplex3D
- multiplot
- layoutMultiplex
- plot_multimotif
- plot_multimodules
- title: "Others"
desc: >
Other functions for building a Configuration Model, for evaluating entropy,
for solving the eigenvalue problem, for finding shortest paths, etc.
- contents:
- CanonicalVector
- GetConfigurationModelTypeIFromNetworkList
- GetConfigurationModelTypeIIFromNetworkList
- BuildDensityMatrixBGS
- GetEigenvaluesOfDensityMatrix
- GetEigenvaluesOfDensityMatrixFromAdjacencyMatrix
- GetInterAssortativityTensor
- GetJensenShannonDivergence
- GetLargestEigenv
- GetLocalClustering
- GetMultilayerReducibility
- GetRenyiEntropyFromAdjacencyMatrix
- GetRewiredLayerWithOverlappingEdges
- GetSPSimilarityMatrix
- MultiShortestPathFromNode
- ShortestPathFromNode
- SolveEigenvalueProblem
- title: "Auxiliary functions"
desc: >
MATLAB-like functions that help building multilayers from diagonal, blockdiagonal...
matrices.
- contents:
- blkdiag
- reshapeR
- diagR
- traceR
- modR
- sumR
- binarizeMatrix