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naive fix for non-tuple sequence warnings #4

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naive fix for non-tuple sequence warnings #4

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10 changes: 5 additions & 5 deletions aicsimageprocessing/rigidAlignment.py
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Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,7 @@ def cell_rigid_registration(

_, croprange = crop_img(get_channel(img, ch_crop), method="bigger")

img = img[croprange]
img = img[tuple(croprange)]

img = align_major(img, angle)

Expand Down Expand Up @@ -58,7 +58,7 @@ def cell_rigid_registration(

croprange = [slice(s, e) for s, e in ranges]

img = img[croprange]
img = img[tuple(croprange)]

img = np.pad(img, pad_width, mode="constant", constant_values=0)

Expand Down Expand Up @@ -156,7 +156,7 @@ def crop_img(img, method="tight"):
# dont crop the channel dimension
croprange[0] = slice(0, None)

img_out = img[croprange]
img_out = img[tuple(croprange)]

return img_out, croprange

Expand All @@ -171,7 +171,7 @@ def get_flipdims(img):
def pad_to_position(img, ch_crop, ch_com, com_target, imsize_target):

_, croprange_pt2 = crop_img(get_channel(img, ch_crop))
img = img[croprange_pt2]
img = img[tuple(croprange_pt2)]

com = get_center_of_mass(get_channel(img, ch_com))

Expand All @@ -190,7 +190,7 @@ def pad_to_position(img, ch_crop, ch_com, com_target, imsize_target):

# def pad_to_center(img, com):
# _, croprange_pt2 = crop_img(get_channel(img, ch_crop))
# img = img[croprange_pt2]
# img = img[tuple(croprange_pt2)]
#
# com = get_center_of_mass(get_channel(img, ch_com))
#
Expand Down