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27 Open 104 Closed
27 Open 104 Closed
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Issues list

Setting output directory SCEVAN/VegaMC files enhancement New feature or request
#132 opened Feb 19, 2025 by Kaam-umcg
2
memory not mapped
#131 opened Jan 29, 2025 by hzongyao
1
Error during multiSampleComparisonClonalCN bug Something isn't working
#128 opened Dec 6, 2024 by RafaellaFerraz
1
Adding a new organism? (Zebrafish) enhancement New feature or request
#126 opened Nov 15, 2024 by alexwskh
1
Allow precomputed baseline for single sample pipeline
#124 opened Sep 30, 2024 by wudustan
4
multiSampleComparisonClonalCN Error in vegaMC_R(mtx = mtx, output_file_name = paste("./output/", sample, : NA/NaN/Inf in foreign function call (arg 1)
#117 opened Jul 4, 2024 by Prakrithi-P
1
Error in data.frame(..., check.names = FALSE) : arguments imply differing number of rows: 6435, 5148
#115 opened Jun 21, 2024 by Ahmed-Ghobashi
8
Error in analysis of an epithelial cluster
#96 opened Dec 12, 2023 by andrianamanousidaki
Is there a maximum of subclones?
#93 opened Nov 27, 2023 by augjensen
2
Compare CNV profiles across many patients
#89 opened Oct 30, 2023 by augjensen
2
Figure format enhancement New feature or request
#78 opened Sep 26, 2023 by wbf520qcp
@AntonioDeFalco
Error at oncoHeat step for subclones
#74 opened Sep 14, 2023 by smdn-tt
1
Error in hclust(parallelDist::parDist(t(CNA_mtx), threads = par_cores, : size cannot be NA nor exceed 65536
#69 opened Jun 21, 2023 by Ilarius
7
T-cell recognized as tumor cells
#68 opened Jun 16, 2023 by oandrefonseca
4
The number of elements of the gene set is less than the minimum allowed.
#67 opened Jun 15, 2023 by pgm99
8
Error in step 9 and step 11
#66 opened Jun 15, 2023 by 39652its
3
Heatmap values ordered by cluster enhancement New feature or request
#64 opened May 2, 2023 by karlacat1
1
count_mtx choose for integrated Seurat object data
#61 opened Apr 23, 2023 by Lawwwwo
1
The fibroblast, EC, and myofibroblasts were also identified as tumor. What are the reasons for this result?
#60 opened Apr 12, 2023 by gloriafight
4
Parallel problem on serialize
#58 opened Apr 6, 2023 by oandrefonseca
2
[solved]deal with memory(RAM) enhancement New feature or request
#56 opened Apr 1, 2023 by seoyounglee6445
2
How to obtain quantitative metrics enhancement New feature or request
#45 opened Dec 7, 2022 by ccruizm
@AntonioDeFalco
1
SCEVAN annotates confidentNormal cell as tumor
#40 opened Oct 13, 2022 by SL1993
4
Re-running the same data produces different results?
#36 opened Sep 28, 2022 by River366
5
Minimum gene set
#29 opened Sep 13, 2022 by BertramLoong
8
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