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jack-brinkmanjack-brinkman
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Added script to add static page to HCAT hub
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‎src/main/scripts/releases/6.8.1/addStaticReferenceAssessmentPageHCAT.js

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const fs = require('fs');
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const pageContent = fs.readFileSync('./html/ref-assess-static.html', 'utf8');
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db.setting.updateOne(
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{ key: 'hcat.Request_Assessment_Records' },
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{
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$set: {
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key: 'hcat.Request_Assessment_Records',
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value: pageContent.replaceAll('\n', '\r\n'),
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version: NumberLong(1)
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},
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$currentDate: {
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lastUpdated: true,
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dateCreated: true
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},
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},
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{ upsert: true }
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);

‎src/main/scripts/releases/6.8.1/html/ref-assess-static.html

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<style>
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.ref-assess-filters-list {
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max-height: 200px;
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overflow-y: scroll;
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}
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.ref-assess-filters-list > div {
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cursor: pointer;
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}
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.ref-assess-filters-list > div.disabled {
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cursor: default;
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}
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.ref-assess-identify-text {
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font-family: 'Lato', sans-serif;
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font-size: 18px;
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}
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.ref-assess-identify-card {
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transition: all cubic-bezier(0, 0, 0.15, 1) 250ms;
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}
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</style>
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<script type="text/javascript">
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var RequestAssessmentRecordsModel = function (mvgMapping, hutchGroups) {
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const self = this;
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this.mvgs = Object.keys(mvgMapping);
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this.mvgSelected = ko.observableArray([]);
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this.climates = hutchGroups;
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this.climateSelected = ko.observableArray([]);
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this.deIdentify = ko.observable(false);
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this.privacyPolicy = ko.observable(false);
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this.isLoading = ko.observable(false);
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this.isMvgSelected = function (filter) {
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return self.mvgSelected.indexOf(filter) > -1;
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};
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this.isClimateSelected = function (filter) {
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return self.climateSelected.indexOf(filter) > -1;
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};
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this.onMvgSelect = function (filter) {
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// Only allow for user interaction if we're not already loading a request
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if (!self.isLoading()) {
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if (self.isMvgSelected(filter)) {
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self.mvgSelected.remove(filter);
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} else {
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self.mvgSelected.push(filter);
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}
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}
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};
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this.onClimateSelect = function (filter) {
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// Only allow for user interaction if we're not already loading a request
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if (!self.isLoading()) {
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if (self.isClimateSelected(filter)) {
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self.climateSelected.remove(filter);
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} else {
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self.climateSelected.push(filter);
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}
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}
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};
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this.onRequestRecords = function () {
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// Update the loading flag
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self.isLoading(true);
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const selectedMvgGroups = self
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.mvgSelected()
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.map((filter) => mvgMapping[filter]);
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const vegetationStructureGroups = Array.from(new Set(selectedMvgGroups));
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const climateGroups = self.climateSelected();
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$.ajax('/referenceAssessment/requestRecords', {
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method: 'POST',
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data: JSON.stringify({
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vegetationStructureGroups,
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climateGroups,
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deIdentify: self.deIdentify(),
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}),
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contentType: 'application/json',
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success: ({ message }) => {
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if (message) bootbox.alert(message);
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setTimeout(window.location.replace('/hcat/bioActivity/list'), 3000);
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},
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error: ({ responseJSON }) => {
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if (responseJSON && responseJSON.message) {
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bootbox.alert(responseJSON.message);
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} else {
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bootbox.alert('An unknown error occurred, please try again later.');
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}
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self.isLoading(false);
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},
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});
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console.log(
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vegetationStructureGroups,
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climateGroups,
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self.privacyPolicy(),
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self.deIdentify()
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);
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};
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};
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</script>
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<div class="container">
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<div class="row mt-4">
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<div class="col-12">
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<div class="f-flex flex-column h-100 p-3">
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<h2>Select your areas of expertise</h2>
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<h4 class="text-secondary">Major Vegetation Groups</h4>
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<p>
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For the Image Assessment task, we ask that you provide an ecosystem
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condition score for a suite of photographic images of different
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habitats allocated to you based on the Major Vegetation Groups and
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Hutchison geographic agro-climatic classifications that you nominate
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as being within your area of expertise. Scoring these images will
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enable your Site Condition Assessments to be calibrated with other
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participants.
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</p>
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<p>
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Please select all of the Major Vegetation Groups (MVG) and Hutchison
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geographic agro-climatic classifications in which you have expertise.
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</p>
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<p>
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After nominating your areas of expertise, please indicate if you would
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like your assessments to be de-identified and confirm you have read,
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understood, and accepted the privacy, IP and ethics arrangements for
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this project. These arrangements are included in the HCAT instructions
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manual accessible via the HCAT homepage.
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</p>
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<div class="d-flex justify-content-center w-100 mb-4">
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<img
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src="https://biocollect.ala.org.au/document/download/2024-03/mvgs.png"
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/>
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</div>
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<div class="d-flex flex-column card bg-white ref-assess-filters-list">
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<!-- ko foreach: mvgs -->
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<div
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data-bind="click: $parent.onMvgSelect, css: { disabled: $parent.isLoading() }"
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class="d-flex flex-row dropdown-item align-items-center"
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>
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<span
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data-bind="style: { opacity: $parent.isMvgSelected($data) ? 1 : 0 }"
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class="fa fa-check mr-3"
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></span>
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<p
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data-bind="text: $data"
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style="text-wrap: wrap; margin-bottom: 0px"
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></p>
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</div>
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<!-- /ko -->
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</div>
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<h4 class="text-secondary mt-4">Agro-climatic Classifications</h4>
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<div class="d-flex justify-content-center w-100 mb-4">
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<img
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width="375"
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src="https://biocollect.ala.org.au/document/download/2024-03/agroclimate.png"
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/>
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</div>
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<div class="d-flex flex-column card bg-white ref-assess-filters-list">
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<!-- ko foreach: climates -->
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<div
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data-bind="click: $parent.onClimateSelect, css: { disabled: $parent.isLoading() }"
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class="d-flex flex-row dropdown-item align-items-center"
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>
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<span
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data-bind="style: { opacity: $parent.isClimateSelected($data) ? 1 : 0 }"
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class="fa fa-check mr-3"
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></span>
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<p
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data-bind="text: $data"
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style="text-wrap: wrap; margin-bottom: 0px"
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></p>
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</div>
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<!-- /ko -->
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</div>
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</div>
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</div>
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</div>
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<div class="row">
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<div class="col-6">
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<div class="py-3 pl-3">
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<button
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type="button"
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data-bind="click: function() { deIdentify(false) }, css: { 'bg-secondary': !deIdentify() }, enable: !isLoading()"
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class="card w-100 d-flex flex-column px-4 py-3 ref-assess-identify-card"
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>
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<span
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data-bind="css: { 'text-white': !deIdentify() }"
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class="fa fa-user fa-2x"
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></span>
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<span
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data-bind="css: { 'text-white': !deIdentify() }"
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class="mt-3 ref-assess-identify-text"
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>Identify my data</span
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>
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</button>
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</div>
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</div>
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<div class="col-6">
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<div class="py-3 pr-3">
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<button
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type="button"
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data-bind="click: function() { deIdentify(true) }, css: { 'bg-secondary': deIdentify() }, enable: !isLoading()"
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class="card w-100 d-flex flex-column px-4 py-3 ref-assess-identify-card"
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>
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<span
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data-bind="css: { 'text-white': deIdentify() }"
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class="fa fa-user-secret fa-2x"
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></span>
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<span
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data-bind="css: { 'text-white': deIdentify() }"
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class="mt-3 ref-assess-identify-text"
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>De-identify my data</span
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>
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</button>
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</div>
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</div>
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</div>
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<div class="row">
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<div class="col-12">
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<div class="px-3 mt-2">
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<p class="text-secondary" data-bind="if: deIdentify()">
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Only members of the HCAT project team will be able to see your name
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associated with the condition assessments you provide. When HCAT data
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is included in publicly available material (e.g. publications,
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reports, presentations, or data repositories) your contributions will
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be anonymised. Your Image Aassessments will not be made public
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regardless of your selection - they are used for calibration purposes
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only
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</p>
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<p class="text-secondary" data-bind="ifnot: deIdentify()">
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Your individual Site Condition Assessments will be credited in
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publicly available material. Your Image Aassessments will not be made
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public regardless of your selection - they are used for calibration
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purposes only
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</p>
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</div>
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</div>
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</div>
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<div class="row">
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<div class="col-12">
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<hr />
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<div class="px-4 mt-3">
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<input
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type="checkbox"
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class="form-check-input"
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data-bind="checked:privacyPolicy"
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/>
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<label>
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<small>
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I agree to be a part of this project and have read, understood and
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accept the privacy, IP and ethics arrangements for this project.
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These arrangements are included in the HCAT instructions manual
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accessible via the HCAT homepage.</small
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>
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</label>
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</div>
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</div>
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</div>
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<div class="row">
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<div class="col-12 pt-2">
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<div class="d-flex justify-content-center p-3">
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<button
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data-bind="click: onRequestRecords, css: {disabled: mvgSelected().length === 0 || climateSelected().length === 0 || !privacyPolicy() || isLoading()}, enable: mvgSelected().length > 0 && climateSelected().length > 0 && !isLoading() && privacyPolicy()"
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class="btn btn-primary justify-self-end full-width"
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>
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<i data-bind="visible: !isLoading()" class="far fa-copy mr-2"></i>
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<span
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data-bind="visible: isLoading()"
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class="fa fa-spin fa-spinner mr-2"
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></span>
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Request Records
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</button>
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</div>
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</div>
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</div>
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<script type="text/javascript">
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const mvgMapping = {
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'1 - Rainforests and Vine Thickets':
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'G1 - Wet and closed forests and thickets',
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'2 - Eucalypt Tall Open Forests':
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'G1 - Wet and closed forests and thickets',
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'3 - Eucalypt Open Forests': 'G2 - Open forest and woodland',
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'4 - Eucalypt Low Open Forests': 'G2 - Open forest and woodland',
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'5 - Eucalypt Woodlands': 'G2 - Open forest and woodland',
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'6 - Acacia Forests and Woodlands': 'G2 - Open forest and woodland',
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'7 - Callitris Forests and Woodlands': 'G2 - Open forest and woodland',
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'8 - Casuarina Forests and Woodlands': 'G2 - Open forest and woodland',
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'9 - Melaleuca Forests and Woodlands': 'G2 - Open forest and woodland',
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'10 - Other Forests and Woodlands': 'G2 - Open forest and woodland',
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'11 - Eucalypt Open Woodlands': 'G2 - Open forest and woodland',
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'12 - Tropical Eucalypt Woodlands/Grasslands':
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'G2 - Open forest and woodland',
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'13 - Acacia Open Woodlands': 'G3 - Shrublands',
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'14 - Mallee Woodlands and Shrublands': 'G3 - Shrublands',
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'15 - Low Closed Forests and Tall Closed Shrublands': 'G3 - Shrublands',
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'16 - Acacia Shrublands': 'G3 - Shrublands',
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'17 - Other Shrublands': 'G3 - Shrublands',
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'18 - Heathlands': 'G3 - Shrublands',
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'19 - Tussock Grasslands': 'G4 - Grasslands',
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'20 - Hummock Grasslands': 'G4 - Grasslands',
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'21 - Other Grasslands, Herblands, Sedgelands and Rushlands':
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'G4 - Grasslands',
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'22 - Chenopod Shrublands, Samphire Shrublands and Forblands':
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'G4 - Grasslands',
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'23 - Mangroves': 'G3 - Shrublands',
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'27 - Naturally Bare - sand, rock, claypan, mudflat': 'G4 - Grasslands',
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'32 - Mallee Open Woodlands and Sparse Mallee Shrublands':
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'G3 - Shrublands',
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'99 - Unknown/No Data': 'G2 - Open forest and woodland',
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};
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const hutchGroups = [
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'B1 - Very cold winters with summers too short for crop growth',
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'B2 - Less severe winters and longer moist summers suitable for some crops',
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'D5 - Moisture availability high in winter-spring, moderate in summer, most plant growth in spring',
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'E1 - Classic "Mediterranean" climate with peaks of growth in winter and spring and moderate growth in winter',
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'E2 - "Mediterranean" climate, but with drier cooler winters and less growth than E1',
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'E3 - Most plant growth in summer, although summers are moisture limiting. Temperature limits growth in winter',
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'E4 - Growth is limited by moisture rather than temperature and the winters are mild. Growth is relatively even through the year',
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'E6 - Semi-arid climate that is too dry to support field crops. Soil moisture tends to be greatest in winter',
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'E7 - Moisture is the main limit on crop growth. Growth index lowest in spring',
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'F3 - Cooler end of the warm, wet sub-tropical climates',
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'F4 - Warmer and wetter than F3',
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'G - Desert, supporting very little plant growth due to water limitation',
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'H - Semi-arid, with some growth in the warm season, but too dry for cropping',
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'I1 - Strongly developed wet and dry seasons with plant growth determined by moisture availability',
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'I2 - Temperature and moisture are more seasonal than for I1 and the growing season is shorter',
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'I3 - This has cooler winters than I1 and I2 with a growing season lasting at least six months',
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'J1 - Moisture and temperature regime supports growth for 8-9 months of the year, with a 3-4 month dry season',
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];
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const requestAssessmentRecordsVM = new RequestAssessmentRecordsModel(
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mvgMapping,
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hutchGroups
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);
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ko.applyBindings(requestAssessmentRecordsVM);
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</script>
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</div>

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