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changelog.xml
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<?xml version="1.1" encoding="UTF-8" standalone="no"?>
<databaseChangeLog xmlns="http://www.liquibase.org/xml/ns/dbchangelog" xmlns:ext="http://www.liquibase.org/xml/ns/dbchangelog-ext" xmlns:pro="http://www.liquibase.org/xml/ns/pro" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.liquibase.org/xml/ns/dbchangelog-ext http://www.liquibase.org/xml/ns/dbchangelog/dbchangelog-ext.xsd http://www.liquibase.org/xml/ns/pro http://www.liquibase.org/xml/ns/pro/liquibase-pro-4.6.xsd http://www.liquibase.org/xml/ns/dbchangelog https://www.liquibase.org/xml/ns/dbchangelog/dbchangelog-4.6.xsd">
<!-- This was generated with:
liquibase \-\-classpath=/var/lib/tomcat8/webapps-colecciones-es.l-a.site/ROOT/WEB-INF/lib/mysql-connector-java-8.0.25.jar diffChangelog
Using a liquibase.properties with:
changeLogFile=changelog.mysql.sql
#### Target Database ####
liquibase.command.url=jdbc:mysql://localhost:3306/collectory?autoReconnect=true&connectTimeout=0&useUnicode=true&characterEncoding=UTF-8&useSSL=False
# username for your Target database.
liquibase.command.username: collectory
liquibase.command.password: XXXXX
#### Source Database ####
## The source database is the baseline or reference against which your target database is compared for diff/diffchangelog commands.
# Enter URL for the source database
liquibase.command.referenceUrl: jdbc:mysql://localhost:3306/collectory_dev?autoReconnect=true&connectTimeout=0&useUnicode=true&characterEncoding=UTF-8&useSSL=False
liquibase.command.referenceUsername: collectory
liquibase.command.referencePassword: XXXXX
-->
<changeSet author="ALA Dev Team" id="1">
<preConditions onFail="MARK_RAN">
<not>
<tableExists tableName="data_resource"/>
</not>
</preConditions>
<comment>Initialize schema</comment>
<sqlFile path="initial.sql" relativeToChangelogFile="true" encoding="ISO-8859-1" stripComments="1" />
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-87">
<preConditions onFail="MARK_RAN">
<not>
<columnExists tableName="data_resource" columnName="repatriation_country" />
</not>
</preConditions>
<addColumn tableName="data_resource">
<column name="repatriation_country" type="VARCHAR(255 BYTE)"/>
</addColumn>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-88">
<preConditions onFail="MARK_RAN">
<not>
<columnExists tableName="data_resource" columnName="is_private" />
</not>
</preConditions>
<addColumn tableName="data_resource">
<column name="is_private" type="BIT(1)"/>
</addColumn>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-89">
<preConditions onFail="MARK_RAN">
<not>
<columnExists tableName="data_resource" columnName="suitable_for" />
</not>
</preConditions>
<addColumn tableName="data_resource">
<column name="suitable_for" type="TEXT(65535)"/>
</addColumn>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-90">
<preConditions onFail="MARK_RAN">
<not>
<columnExists tableName="data_resource" columnName="data_collection_protocol_name" />
</not>
</preConditions>
<addColumn tableName="data_resource">
<column name="data_collection_protocol_name" type="TEXT(65535)"/>
</addColumn>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-91">
<preConditions onFail="MARK_RAN">
<not>
<columnExists tableName="data_resource" columnName="data_collection_protocol_doc" />
</not>
</preConditions>
<addColumn tableName="data_resource">
<column name="data_collection_protocol_doc" type="TEXT(65535)"/>
</addColumn>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-92">
<preConditions onFail="MARK_RAN">
<not>
<columnExists tableName="data_resource" columnName="suitable_for_other_detail" />
</not>
</preConditions>
<addColumn tableName="data_resource">
<column name="suitable_for_other_detail" type="TEXT(65535)"/>
</addColumn>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-96">
<preConditions onFail="MARK_RAN">
<not>
<indexExists tableName="collection" columnNames="uid" />
</not>
</preConditions>
<createIndex indexName="uid_idx" tableName="collection">
<column name="uid"/>
</createIndex>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-97">
<preConditions onFail="MARK_RAN">
<not>
<indexExists tableName="data_hub" columnNames="uid" />
</not>
</preConditions>
<createIndex indexName="uid_idx" tableName="data_hub">
<column name="uid"/>
</createIndex>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-98">
<preConditions onFail="MARK_RAN">
<not>
<indexExists tableName="data_provider" columnNames="uid" />
</not>
</preConditions>
<createIndex indexName="uid_idx" tableName="data_provider">
<column name="uid"/>
</createIndex>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-99">
<preConditions onFail="MARK_RAN">
<not>
<indexExists tableName="data_resource" columnNames="uid" />
</not>
</preConditions>
<createIndex indexName="uid_idx" tableName="data_resource">
<column name="uid"/>
</createIndex>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-100">
<preConditions onFail="MARK_RAN">
<not>
<indexExists tableName="institution" columnNames="uid" />
</not>
</preConditions>
<createIndex indexName="uid_idx" tableName="institution">
<column name="uid"/>
</createIndex>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-104" failOnError="false">
<dropUniqueConstraint constraintName="collection_id" tableName="provider_map"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-1">
<modifyDataType columnName="attributions" newDataType="varchar(256)" tableName="collection"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-2">
<modifyDataType columnName="attributions" newDataType="varchar(256)" tableName="data_hub"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-3">
<addNotNullConstraint columnDataType="varchar(256)" columnName="attributions" tableName="data_hub" validate="true"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-4">
<modifyDataType columnName="attributions" newDataType="varchar(256)" tableName="data_provider"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-5">
<modifyDataType columnName="attributions" newDataType="varchar(256)" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-6">
<modifyDataType columnName="attributions" newDataType="varchar(256)" tableName="institution"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-7">
<modifyDataType columnName="citation" newDataType="varchar(4096)" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-8">
<modifyDataType columnName="connection_parameters" newDataType="longtext" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-9">
<modifyDataType columnName="data_generalizations" newDataType="longtext" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-10">
<modifyDataType columnName="default_darwin_core_values" newDataType="longtext" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-11">
<modifyDataType columnName="focus" newDataType="longtext" tableName="collection"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-12">
<modifyDataType columnName="focus" newDataType="varchar(2048)" tableName="data_hub"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-13">
<modifyDataType columnName="focus" newDataType="varchar(2048)" tableName="data_provider"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-14">
<modifyDataType columnName="focus" newDataType="longtext" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-15">
<modifyDataType columnName="focus" newDataType="varchar(2048)" tableName="institution"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-16">
<modifyDataType columnName="guid" newDataType="varchar(256)" tableName="collection"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-17">
<modifyDataType columnName="guid" newDataType="varchar(256)" tableName="data_hub"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-18">
<modifyDataType columnName="guid" newDataType="varchar(256)" tableName="data_provider"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-19">
<modifyDataType columnName="guid" newDataType="varchar(256)" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-20">
<modifyDataType columnName="guid" newDataType="varchar(256)" tableName="institution"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-21">
<modifyDataType columnName="harvesting_notes" newDataType="longtext" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-22">
<modifyDataType columnName="information_withheld" newDataType="longtext" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-23">
<modifyDataType columnName="keywords" newDataType="varchar(1024)" tableName="collection"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-24">
<modifyDataType columnName="kingdom_coverage" newDataType="varchar(1024)" tableName="collection"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-25">
<dropNotNullConstraint columnDataType="decimal(13,10)" columnName="latitude" tableName="collection"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-26">
<dropNotNullConstraint columnDataType="decimal(13,10)" columnName="latitude" tableName="data_provider"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-27">
<dropNotNullConstraint columnDataType="decimal(13,10)" columnName="latitude" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-28">
<dropNotNullConstraint columnDataType="decimal(13,10)" columnName="latitude" tableName="institution"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-29">
<dropNotNullConstraint columnDataType="decimal(13,10)" columnName="longitude" tableName="collection"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-30">
<dropNotNullConstraint columnDataType="decimal(13,10)" columnName="longitude" tableName="data_provider"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-31">
<dropNotNullConstraint columnDataType="decimal(13,10)" columnName="longitude" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-32">
<dropNotNullConstraint columnDataType="decimal(13,10)" columnName="longitude" tableName="institution"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-33">
<dropDefaultValue columnDataType="boolean" columnName="make_contact_public" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-34">
<modifyDataType columnName="member_collections" newDataType="varchar(4096)" tableName="data_hub"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-35">
<modifyDataType columnName="member_data_resources" newDataType="varchar(4096)" tableName="data_hub"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-36">
<modifyDataType columnName="member_institutions" newDataType="longtext" tableName="data_hub"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-37">
<modifyDataType columnName="members" newDataType="longtext" tableName="data_hub"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-38">
<modifyDataType columnName="mobilisation_notes" newDataType="longtext" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-39">
<modifyDataType columnName="name" newDataType="varchar(1024)" tableName="collection"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-40">
<modifyDataType columnName="name" newDataType="varchar(1024)" tableName="institution"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-41">
<modifyDataType columnName="name" newDataType="varchar(45)" tableName="sequence"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-42">
<modifyDataType columnName="network_membership" newDataType="varchar(256)" tableName="collection"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-43">
<modifyDataType columnName="network_membership" newDataType="varchar(256)" tableName="data_provider"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-44">
<modifyDataType columnName="network_membership" newDataType="varchar(256)" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-45">
<modifyDataType columnName="new_value" newDataType="varchar(2048)" tableName="audit_log"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-46">
<modifyDataType columnName="notes" newDataType="varchar(2048)" tableName="collection"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-47">
<modifyDataType columnName="notes" newDataType="varchar(2048)" tableName="data_hub"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-48">
<modifyDataType columnName="notes" newDataType="varchar(2048)" tableName="data_provider"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-49">
<modifyDataType columnName="notes" newDataType="longtext" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-50">
<modifyDataType columnName="notes" newDataType="varchar(2048)" tableName="institution"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-51">
<modifyDataType columnName="old_value" newDataType="varchar(2048)" tableName="audit_log"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-52">
<modifyDataType columnName="permissions_document" newDataType="longtext" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-54">
<modifyDataType columnName="phone" newDataType="varchar(200)" tableName="collection"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-55">
<modifyDataType columnName="phone" newDataType="varchar(200)" tableName="data_hub"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-56">
<modifyDataType columnName="phone" newDataType="varchar(200)" tableName="data_provider"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-57">
<modifyDataType columnName="phone" newDataType="varchar(200)" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-58">
<modifyDataType columnName="phone" newDataType="varchar(200)" tableName="institution"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-59">
<modifyDataType columnName="prefix" newDataType="varchar(5)" tableName="sequence"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-60">
<modifyDataType columnName="pub_description" newDataType="clob" tableName="collection"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-61">
<modifyDataType columnName="pub_description" newDataType="clob" tableName="data_hub"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-62">
<modifyDataType columnName="pub_description" newDataType="clob" tableName="data_provider"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-63">
<modifyDataType columnName="pub_description" newDataType="clob" tableName="institution"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-64">
<addDefaultValue columnDataType="boolean" columnName="public_archive_available" defaultValueBoolean="false" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-65">
<modifyDataType columnName="rights" newDataType="longtext" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-66">
<modifyDataType columnName="scientific_names" newDataType="varchar(2048)" tableName="collection"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-67">
<modifyDataType columnName="status" newDataType="varchar(45)" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-68">
<dropNotNullConstraint columnDataType="varchar(255)" columnName="status" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-69">
<modifyDataType columnName="sub_collections" newDataType="varchar(4096)" tableName="collection"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-70">
<modifyDataType columnName="taxonomy_hints" newDataType="varchar(1024)" tableName="collection"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-71">
<modifyDataType columnName="taxonomy_hints" newDataType="varchar(1024)" tableName="data_hub"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-72">
<modifyDataType columnName="taxonomy_hints" newDataType="varchar(1024)" tableName="data_provider"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-73">
<modifyDataType columnName="taxonomy_hints" newDataType="longtext" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-74">
<modifyDataType columnName="taxonomy_hints" newDataType="varchar(1024)" tableName="institution"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-75">
<modifyDataType columnName="tech_description" newDataType="clob" tableName="collection"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-76">
<modifyDataType columnName="tech_description" newDataType="clob" tableName="data_hub"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-77">
<modifyDataType columnName="tech_description" newDataType="clob" tableName="data_provider"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-78">
<modifyDataType columnName="tech_description" newDataType="clob" tableName="data_resource"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-79">
<modifyDataType columnName="tech_description" newDataType="clob" tableName="institution"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-81">
<preConditions onFail="MARK_RAN">
<not>
<indexExists tableName="provider_map" columnNames="collection_id" />
</not>
</preConditions>
<createIndex indexName="collection_id" tableName="provider_map" unique="false">
<column name="collection_id"/>
</createIndex>
</changeSet>
<!--
Another useful way to specify changesets is with plain mysql files:
-->
<!--
<changeSet author="ALA Dev Team" id="1" failOnError="WARN">
<preConditions>
<not>
<columnExists tableName="data_resource" columnName="suitable_for" />
</not>
</preConditions>
<comment>Some comment</comment>
<sqlFile path="some.sql" relativeToChangelogFile="true" encoding="utf8" stripComments="1" />
</changeSet>
-->
<changeSet author="ALA Dev Team" id="1647535601585-105">
<dropNotNullConstraint columnDataType="varchar(256)" columnName="attributions" tableName="data_hub"/>
</changeSet>
<changeSet author="ALA Dev Team" id="1647535601585-106">
<dropNotNullConstraint columnDataType="decimal(13,10)" columnName="latitude" tableName="data_hub"/>
<dropNotNullConstraint columnDataType="decimal(13,10)" columnName="longitude" tableName="data_hub"/>
</changeSet>
<changeSet author="vjrj" id="20230210-00">
<preConditions onFail="MARK_RAN">
<tableExists tableName="sequence" />
<columnExists tableName="sequence" columnName="version" />
</preConditions>
<dropColumn tableName="sequence" columnName="version" />
</changeSet>
<changeSet author="vjrj" id="20230210-01">
<preConditions onFail="MARK_RAN">
<sqlCheck expectedResult="0">SELECT COUNT(1) FROM sequence;</sqlCheck>
</preConditions>
<sql>
INSERT INTO `sequence` (id, name, next_id, prefix)
VALUES (1,'collection',0,'co'),
(2,'institution',0,'in'),
(3,'dataProvider',0,'dp'),
(4,'dataResource',0,'dr'),
(5,'dataHub',0,'dh'),
(6,'attribution',0,'at'),
(7,'tempDataResource',0,'drt');
</sql>
</changeSet>
<changeSet author="ALA Dev Team" id="20231122-00">
<sqlFile path="5.1.0.sql" relativeToChangelogFile="true" encoding="ISO-8859-1" stripComments="1" />
</changeSet>
<changeSet author="ALA Dev Team" id="20231123-00">
<sqlFile path="5.1.0.1.sql" relativeToChangelogFile="true" encoding="ISO-8859-1" stripComments="1" />
</changeSet>
<!-- Table DataLink is no longer required but keep in case of rollback. -->
<changeSet author="ALA Dev Team" id="20231212-00">
<sqlFile path="5.1.0.2.sql" relativeToChangelogFile="true" encoding="ISO-8859-1" stripComments="1" />
</changeSet>
<changeSet author="ALA Dev Team" id="20240115-00">
<sqlFile path="5.1.0.3.sql" relativeToChangelogFile="true" encoding="ISO-8859-1" stripComments="1" />
</changeSet>
<changeSet author="djtfmartin" id="20231025-01">
<preConditions onFail="MARK_RAN">
<not>
<columnExists tableName="data_resource" columnName="created_byid" />
</not>
</preConditions>
<addColumn tableName="data_resource">
<column name="created_byid" type="VARCHAR(255 BYTE)"/>
</addColumn>
</changeSet>
<changeSet author="vjrj" id="20250127-01">
<preConditions onFail="MARK_RAN">
<not>
<columnExists tableName="contact" columnName="organization_name" />
</not>
</preConditions>
<addColumn tableName="contact">
<column name="organization_name" type="VARCHAR(255)"/>
</addColumn>
</changeSet>
<changeSet author="vjrj" id="20250127-02">
<preConditions onFail="MARK_RAN">
<not>
<columnExists tableName="contact" columnName="position_name" />
</not>
</preConditions>
<addColumn tableName="contact">
<column name="position_name" type="VARCHAR(255)"/>
</addColumn>
</changeSet>
<changeSet author="vjrj" id="20250127-03">
<preConditions onFail="MARK_RAN">
<not>
<columnExists tableName="contact" columnName="user_id" />
</not>
</preConditions>
<addColumn tableName="contact">
<column name="user_id" type="VARCHAR(255)"/>
</addColumn>
</changeSet>
</databaseChangeLog>