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Release v0.1.0
* Initial code * Update readme and license * dwcahandler package to list darwin core term and pytest * Update run-tests.yml * add init file in tests * add init file in tests * Update run-tests.yml * Update run-tests.yml * add init file in tests * update run-test github action * update run-test github action * update run-test github action * Make create dwca to accept dataframe, bugfix on read eml from existing dwca * Update readme * Update readme * Add Eml support * updated readme * Update README.md - syntax highlighting * Extracting type and format from the associatedMedia * Added .gitignore * added test case with pytest fixture for extract records * Feature/clean up (#7) * fix error on pytest in github action * bugfix * remove duplicates and test * fix pylint warnings * #3 - Remove the LargeDwca class * #3 - Upgrade pandas version to latest * Bump urllib3 from 2.1.0 to 2.2.2 (#6) Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.1.0 to 2.2.2. - [Release notes](https://github.com/urllib3/urllib3/releases) - [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst) - [Commits](urllib3/urllib3@2.1.0...2.2.2) --- updated-dependencies: - dependency-name: urllib3 dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Upgrade request package * Add github action to run build and publishing to testpypi * update github action * update github action for publishing to test * test on multiple versions of python and os * bugfix for windows path * Add create dwca tests * upgrade version for test * Add build and publish automation. Set version * Add prepare release automation * Fix typo --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: Patricia Koh <patkyn@hotmail.com> Co-authored-by: Patricia Koh <patricia.koh@csiro.au> Co-authored-by: Dave Martin <djtfmartin@users.noreply.github.com> Co-authored-by: Mahmoud <sadeghim@gmail.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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‎.github/workflows/prepare-release.yml

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# This is a basic workflow that is manually triggered
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name: Create release branch from develop
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on:
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workflow_dispatch:
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branches: [ "develop" ]
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jobs:
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draft-new-release:
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if:
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contains(github.ref, 'develop')
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name: "Draft a new release"
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: Set up Python 3.9
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uses: actions/setup-python@v4
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with:
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python-version: "3.9"
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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip
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- name: Install dependencies
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run: |
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python -m pip install poetry
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poetry install
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- name: Build
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id: build-step
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run: |
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poetry build
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VERSION=$(poetry version -s)
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echo "$VERSION"
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echo "version=$VERSION" >> $GITHUB_OUTPUT
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- name: Create release branch
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run: git checkout -b release/${{ steps.build-step.outputs.version }}
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- name: Push new branch
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run: git push origin release/${{ steps.build-step.outputs.version }}
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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- name: Create pull request
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run: gh pr create -H release/${{ steps.build-step.outputs.version }} -B main
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--title 'Release v${{ steps.build-step.outputs.version }}'
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--body 'Created by Github action'
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

‎.github/workflows/publish-release.yml

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name: Publish release build to pypi and create release tag
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on:
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push:
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branches: [ "main" ]
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jobs:
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build:
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runs-on: ubuntu-latest
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outputs:
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version: ${{ steps.build-step.outputs.version }}
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steps:
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- uses: actions/checkout@v4
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- name: Set up Python 3.9
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uses: actions/setup-python@v5
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with:
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python-version: "3.9"
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- name: Install pip and flake package
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run: |
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python -m pip install --upgrade pip
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pip install flake8 pytest
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- name: Lint with flake8
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run: |
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# stop the build if there are Python syntax errors or undefined names
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flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
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# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
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flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
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- name: Install poetry and project dependencies
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run: |
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python -m pip install poetry
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poetry install
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- name: Test with pytest
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run: |
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echo ${{ github.workspace }}
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cd ${{ github.workspace }}/tests
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poetry run pytest
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- name: Build
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id: build-step
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run: |
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poetry build
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VERSION=$(poetry version -s)
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echo "$VERSION"
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echo "version=$VERSION" >> $GITHUB_OUTPUT
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- name: Print release version
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run: |
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echo "the version number is ${{ steps.build-step.outputs.version }}"
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- name: Archive production artifacts
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uses: actions/upload-artifact@v4
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with:
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name: dwcahandler-dist-v${{ steps.build-step.outputs.version }}
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path: dist
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publish-to-pypi:
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name: Publish dwcahandler distribution to PyPI
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runs-on: ubuntu-latest
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needs:
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- build
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environment:
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name: production
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url: https://pypi.org/p/dwcahandler
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permissions:
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id-token: write # IMPORTANT: mandatory for trusted publishing
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steps:
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- name: Download all the dists
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uses: actions/download-artifact@v4
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with:
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name: dwcahandler-dist-v${{ needs.build.outputs.version }}
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path: dist/
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- name: Publish dwcahandler distribution to PyPI
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uses: pypa/gh-action-pypi-publish@release/v1
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github-release:
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name: >-
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Sign the dwcahandler distribution with Sigstore
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and upload them to GitHub Release
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needs: [build, publish-to-pypi]
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runs-on: ubuntu-latest
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permissions:
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contents: write # IMPORTANT: mandatory for making GitHub Releases
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id-token: write # IMPORTANT: mandatory for sigstore
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steps:
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- name: Download all the dists
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uses: actions/download-artifact@v4
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with:
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name: dwcahandler-dist-v${{ needs.build.outputs.version }}
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path: dist/
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- name: Sign the dists with Sigstore
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uses: sigstore/gh-action-sigstore-python@v2.1.1
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with:
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inputs: >-
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./dist/*.tar.gz
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./dist/*.whl
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- name: Create GitHub Release
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id: create-release
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env:
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GITHUB_TOKEN: ${{ github.token }}
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run: |
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version="v${{ needs.build.outputs.version }}"
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gh release create $version --repo ${{ github.repository }}
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echo "tag-version=$version" >> "$GITHUB_OUTPUT"
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- name: Upload artifact signatures to GitHub Release
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env:
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GITHUB_TOKEN: ${{ github.token }}
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# Upload to GitHub Release using the `gh` CLI.
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# `dist/` contains the built packages, and the
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# sigstore-produced signatures and certificates.
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run: >-
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gh release upload
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'${{ steps.create-release.outputs.tag-version }}' dist/**
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--repo '${{ github.repository }}'

‎.github/workflows/publish-test.yml

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name: Publish test build to testpypi
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on:
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workflow_dispatch:
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jobs:
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build:
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runs-on: ubuntu-latest
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outputs:
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version: ${{ steps.build-step.outputs.version }}
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steps:
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- uses: actions/checkout@v4
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- name: Set up Python 3.9
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uses: actions/setup-python@v5
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with:
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python-version: "3.9"
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- name: Install pip and flake package
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run: |
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python -m pip install --upgrade pip
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pip install flake8 pytest
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- name: Lint with flake8
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run: |
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# stop the build if there are Python syntax errors or undefined names
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flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
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# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
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flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
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- name: Install poetry and project dependencies
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run: |
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python -m pip install poetry
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poetry install
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- name: Test with pytest
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run: |
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echo ${{ github.workspace }}
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cd ${{ github.workspace }}/tests
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poetry run pytest
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- name: Build
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id: build-step
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run: |
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poetry build
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VERSION=$(poetry version -s)
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echo "$VERSION"
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echo "version=$VERSION" >> $GITHUB_OUTPUT
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- name: Output the release version of dwcahandler
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run: |
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echo "the version number is ${{ steps.build-step.outputs.version }}"
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- name: Archive test artifacts
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uses: actions/upload-artifact@v4
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with:
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name: dwcahandler-test-dist-v${{ steps.build-step.outputs.version }}
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path: dist
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publish-to-pypi:
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name: Publish dwcahandler distribution to TestPyPI
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needs:
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- build
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runs-on: ubuntu-latest
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environment:
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name: test
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url: https://test.pypi.org/p/dwcahandler
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permissions:
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id-token: write # IMPORTANT: mandatory for trusted publishing
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steps:
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- name: Download all the dists
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uses: actions/download-artifact@v4
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with:
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name: dwcahandler-test-dist-v${{ needs.build.outputs.version }}
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path: dist/
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- name: Publish dwcahandler distribution to TestPyPI
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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repository-url: https://test.pypi.org/legacy/

‎.github/workflows/run-tests.yml

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name: Run test
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on:
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push:
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branches: [ "main", "develop" ]
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pull_request:
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branches: [ "main", "develop" ]
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permissions:
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contents: read
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jobs:
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build:
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name: Run tests on ${{ matrix.python.key || matrix.python }} with ${{ matrix.os }}
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strategy:
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fail-fast: true
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matrix:
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os: [ubuntu-latest, macos-12, Windows-latest]
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python:
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- "3.9"
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- "3.10"
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- "3.11"
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- "3.12"
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runs-on: ${{ matrix.os }}
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steps:
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- uses: actions/checkout@v4
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- name: Set up Python ${{ matrix.python }}
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uses: actions/setup-python@v5
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with:
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python-version: ${{ matrix.python }}
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- name: Install pip and flake8 package
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run: |
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python -m pip install --upgrade pip
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pip install flake8 pytest
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- name: Lint with flake8
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run: |
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# stop the build if there are Python syntax errors or undefined names
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flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
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# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
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flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
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- name: Install project dependencies
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run: |
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python -m pip install poetry
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poetry install
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- name: Test with pytest
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run: |
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echo ${{ github.workspace }}
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cd ${{ github.workspace }}/tests
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poetry run pytest
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