SummarizeTCellActivation does not actually create a seurat object

BimberLab · Feb 12, 2024 · 037d325 · 037d325
1 parent e170708
commit 037d325
Showing 1 changed file with 1 addition and 3 deletions.
diff --git a/singlecell/resources/chunks/SummarizeTCellActivation.R b/singlecell/resources/chunks/SummarizeTCellActivation.R
@@ -11,9 +11,7 @@ for (datasetId in names(seuratObjects)) {
     seuratObj <- readSeuratRDS(seuratObjects[[datasetId]])
 
     outFile <- paste0(outputPrefix, '.', makeLegalFileName(datasetId), '.activation.txt')
-    seuratObj <- Rdiscvr::SummarizeTNK_Activation(seuratObj, outFile = outFile, xFacetField = xFacetField, groupingFields = groupingFields, activationFieldName = activationFieldName, threshold = threshold)
-
-    saveData(seuratObj, datasetId)
+    Rdiscvr::SummarizeTNK_Activation(seuratObj, outFile = outFile, xFacetField = xFacetField, groupingFields = groupingFields, activationFieldName = activationFieldName, threshold = threshold)
 
     # Cleanup
     rm(seuratObj)