Update annotation class

BimberLab · Mar 8, 2024 · 1102439 · 1102439
1 parent 9ec4249
commit 1102439
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/BcftoolsFillTagsStep.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/BcftoolsFillTagsStep.java
@@ -2,6 +2,7 @@
 
 import htsjdk.samtools.util.Interval;
 import org.apache.commons.lang3.StringUtils;
+import org.jetbrains.annotations.Nullable;
 import org.json.JSONObject;
 import org.labkey.api.pipeline.PipelineJobException;
 import org.labkey.api.sequenceanalysis.SequenceAnalysisService;
@@ -19,7 +20,6 @@
 import org.labkey.api.util.PageFlowUtil;
 import org.labkey.sequenceanalysis.pipeline.SequenceTaskHelper;
 
-import javax.annotation.Nullable;
 import java.io.File;
 import java.io.IOException;
 import java.util.ArrayList;

diff --git a/...nceAnalysis/src/org/labkey/sequenceanalysis/run/variant/SummarizeGenotypeQualityStep.java b/...nceAnalysis/src/org/labkey/sequenceanalysis/run/variant/SummarizeGenotypeQualityStep.java
@@ -1,6 +1,7 @@
 package org.labkey.sequenceanalysis.run.variant;
 
 import htsjdk.samtools.util.Interval;
+import org.jetbrains.annotations.Nullable;
 import org.json.JSONObject;
 import org.labkey.api.pipeline.PipelineJobException;
 import org.labkey.api.sequenceanalysis.pipeline.AbstractPipelineStep;
@@ -16,7 +17,6 @@
 import org.labkey.api.sequenceanalysis.run.DISCVRSeqRunner;
 import org.labkey.api.util.PageFlowUtil;
 
-import javax.annotation.Nullable;
 import java.io.File;
 import java.util.ArrayList;
 import java.util.List;

diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/VariantQCStep.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/VariantQCStep.java
@@ -2,6 +2,7 @@
 
 import htsjdk.samtools.util.Interval;
 import org.apache.commons.io.FileUtils;
+import org.jetbrains.annotations.Nullable;
 import org.json.JSONObject;
 import org.labkey.api.pipeline.PipelineJobException;
 import org.labkey.api.sequenceanalysis.pipeline.AbstractPipelineStep;
@@ -17,7 +18,6 @@
 import org.labkey.api.util.PageFlowUtil;
 import org.labkey.sequenceanalysis.pipeline.ProcessVariantsHandler;
 
-import javax.annotation.Nullable;
 import java.io.File;
 import java.io.IOException;
 import java.util.ArrayList;