Add GLnexus.DB as intermediate file

BimberLab · Feb 2, 2024 · 262b703 · 262b703
1 parent 3bd8e95
commit 262b703
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/analysis/GLNexusHandler.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/analysis/GLNexusHandler.java
@@ -284,6 +284,7 @@ public void execute(List<File> inputGvcfs, File outputVcf, PipelineOutputTracker
 
                 // Command will fail if this exists:
                 File dbDir = new File (outputVcf.getParentFile(), "GLnexus.DB");
+                tracker.addIntermediateFile(dbDir);
                 if (dbDir.exists())
                 {
                     getLogger().debug("Deleting pre-existing GLnexus.DB dir");