Bugfix to GatherVcfsCloud

BimberLab · Feb 22, 2025 · 474d362 · 474d362
1 parent 551321d
commit 474d362
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/GatherVcfsCloudWrapper.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/GatherVcfsCloudWrapper.java
@@ -34,6 +34,9 @@ public void gatherVcfs(File output, List<File> inputVcfs) throws PipelineJobExce
             throw new PipelineJobException(e);
         }
 
+        args.add("-I");
+        args.add(argFile.getPath());
+
         execute(args);
 
         argFile.delete();