Support more studies

BimberLab · Apr 2, 2024 · 5fb77dc · 5fb77dc
1 parent ef08c06
commit 5fb77dc
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Showing 2 changed files with 3 additions and 1 deletion.
diff --git a/singlecell/resources/chunks/StudyMetadata.R b/singlecell/resources/chunks/StudyMetadata.R
@@ -18,6 +18,8 @@ for (datasetId in names(seuratObjects)) {
         seuratObj <- Rdiscvr::ApplyMalariaMetadata(seuratObj, errorIfUnknownIdsFound = errorIfUnknownIdsFound)
     } else if (studyName == 'PC531') {
         seuratObj <- Rdiscvr::ApplyPC531Metadata(seuratObj, errorIfUnknownIdsFound = errorIfUnknownIdsFound)
+    } else if (studyName == 'AcuteNx') {
+        seuratObj <- Rdiscvr::ApplyAcuteNxMetadata(seuratObj, errorIfUnknownIdsFound = errorIfUnknownIdsFound)
     } else {
         stop(paste0('Unknown study: ', studyName))
     }

diff --git a/singlecell/src/org/labkey/singlecell/pipeline/singlecell/StudyMetadata.java b/singlecell/src/org/labkey/singlecell/pipeline/singlecell/StudyMetadata.java
@@ -24,7 +24,7 @@ public Provider()
                     {{
                         put("multiSelect", false);
                         put("allowBlank", false);
-                        put("storeValues", "PC475;PC531;TB;Malaria");
+                        put("storeValues", "PC475;PC531;TB;Malaria;AcuteNx");
                         put("delimiter", ";");
                     }}, null, null, false, false),
                     SeuratToolParameter.create("errorIfUnknownIdsFound", "Error If Unknown Ids Found", "If true, the job will fail if the seurat object contains ID not present in the metadata", "checkbox", null, true)