Bugfix to CellRangerVDJWrapper

BimberLab · Aug 25, 2024 · 7008b39 · 7008b39
1 parent 82797da
commit 7008b39
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/singlecell/api-src/org/labkey/api/singlecell/CellHashingService.java b/singlecell/api-src/org/labkey/api/singlecell/CellHashingService.java
@@ -170,7 +170,7 @@ public static CellHashingParameters createFromJson(BARCODE_TYPE type, File webse
             ret.majorityConsensusThreshold = params.get("majorityConsensusThreshold") == null ? null : params.getDouble("majorityConsensusThreshold");
             ret.minAllowableDoubletRateFilter = params.get("minAllowableDoubletRateFilter") == null ? null : params.getDouble("minAllowableDoubletRateFilter");
             ret.callerDisagreementThreshold = params.get("callerDisagreementThreshold") == null ? null : params.getDouble("callerDisagreementThreshold");
-            ret.doTSNE = params.get("doTSNE") == null || params.optBoolean("doTSNE", false);
+            ret.doTSNE = params.optBoolean("doTSNE", false);
             ret.retainRawCountFile = params.optBoolean("retainRawCountFile", true);
             ret.failIfUnexpectedHtosFound = params.optBoolean("failIfUnexpectedHtosFound", true);
             ret.htoReadset = htoReadset;