From c044213037d2d79609c9fd36e2e96f26f5ee76ad Mon Sep 17 00:00:00 2001
From: bbimber <bbimber@gmail.com>
Date: Thu, 7 Mar 2024 17:46:00 -0800
Subject: [PATCH] Update annotation class

---
 .../sequenceanalysis/run/analysis/BcftoolsFillTagsStep.java     | 2 +-
 .../run/variant/SummarizeGenotypeQualityStep.java               | 2 +-
 .../org/labkey/sequenceanalysis/run/variant/VariantQCStep.java  | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/BcftoolsFillTagsStep.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/BcftoolsFillTagsStep.java
index 848ad1575..1a16feacd 100644
--- a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/BcftoolsFillTagsStep.java
+++ b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/BcftoolsFillTagsStep.java
@@ -2,6 +2,7 @@
 
 import htsjdk.samtools.util.Interval;
 import org.apache.commons.lang3.StringUtils;
+import org.jetbrains.annotations.Nullable;
 import org.json.JSONObject;
 import org.labkey.api.pipeline.PipelineJobException;
 import org.labkey.api.sequenceanalysis.SequenceAnalysisService;
@@ -19,7 +20,6 @@
 import org.labkey.api.util.PageFlowUtil;
 import org.labkey.sequenceanalysis.pipeline.SequenceTaskHelper;
 
-import javax.annotation.Nullable;
 import java.io.File;
 import java.io.IOException;
 import java.util.ArrayList;
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/SummarizeGenotypeQualityStep.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/SummarizeGenotypeQualityStep.java
index 872eba270..2ac75b4c3 100644
--- a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/SummarizeGenotypeQualityStep.java
+++ b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/SummarizeGenotypeQualityStep.java
@@ -1,6 +1,7 @@
 package org.labkey.sequenceanalysis.run.variant;
 
 import htsjdk.samtools.util.Interval;
+import org.jetbrains.annotations.Nullable;
 import org.json.JSONObject;
 import org.labkey.api.pipeline.PipelineJobException;
 import org.labkey.api.sequenceanalysis.pipeline.AbstractPipelineStep;
@@ -16,7 +17,6 @@
 import org.labkey.api.sequenceanalysis.run.DISCVRSeqRunner;
 import org.labkey.api.util.PageFlowUtil;
 
-import javax.annotation.Nullable;
 import java.io.File;
 import java.util.ArrayList;
 import java.util.List;
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/VariantQCStep.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/VariantQCStep.java
index 2e331982f..52d6bf1ab 100644
--- a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/VariantQCStep.java
+++ b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/VariantQCStep.java
@@ -2,6 +2,7 @@
 
 import htsjdk.samtools.util.Interval;
 import org.apache.commons.io.FileUtils;
+import org.jetbrains.annotations.Nullable;
 import org.json.JSONObject;
 import org.labkey.api.pipeline.PipelineJobException;
 import org.labkey.api.sequenceanalysis.pipeline.AbstractPipelineStep;
@@ -17,7 +18,6 @@
 import org.labkey.api.util.PageFlowUtil;
 import org.labkey.sequenceanalysis.pipeline.ProcessVariantsHandler;
 
-import javax.annotation.Nullable;
 import java.io.File;
 import java.io.IOException;
 import java.util.ArrayList;