Set job status in GLNexusHandler

BimberLab · Feb 9, 2024 · e170708 · e170708
1 parent 8258db3
commit e170708
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/analysis/GLNexusHandler.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/analysis/GLNexusHandler.java
@@ -190,6 +190,7 @@ else if (genomeIds.isEmpty())
                 else
                 {
                     ctx.getLogger().debug("Running GLNexus for contig: " + r.getSequenceName());
+                    ctx.getJob().setStatus(PipelineJob.TaskStatus.running, "Processing: " + r.getSequenceName());
                     new GLNexusWrapper(ctx.getLogger()).execute(inputVcfs, contigVcf, ctx.getFileManager(), binVersion, configType, r);
                     vcfs.add(contigVcf);
                     try