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Releases: BioOmics/iSeq

v1.9.2

23 May 14:47
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  • Fixed the issue mentioned in #39. The problem was that using both -d sra and -g together would skip the MD5 check in vdb-validate.
  • New -k, --skip-md5 option: Added this option to disable MD5 checks.

v1.9.1

25 Apr 09:15
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  • Fixed a bug that occurred when re-downloading with empty metadata.
  • Fixed a bug where the while loop exited abnormally with a non-zero exit code.

v1.9.0

22 Apr 06:58
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  • Fixed the issue mentioned in #33. -s, --speed re-enable use.
  • Fix the exception when the metadata file is empty, mentioned in #34
  • Bug fix to resolve the issue of MD5 checksum failure when downloading ONT or HiFi third-generation sequencing gzip data.

v1.8.0

02 Apr 05:09
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Fix for [#27]: When downloading SRA files, the verification process gets stuck due to vdb-validate. This issue occurs because, starting from sra-tools version > 3.0.0, if vdb-validate is run without specifying the path to the SRA file, it attempts to re-download the file, causing the process to get stuck.

For example:
Running vdb-validate SRR931847 will hang, but vdb-validate ./SRR931847 will execute successfully.

v1.7.0

14 Mar 03:24
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  • Fixed the issue mentioned in #26. The cause was that the data was paired-end but had only one link, such as SRR23680070.

v1.6.0

11 Mar 09:26
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  • Input file can contain accessions from different databases.
  • -p and -a can be used simultaneously, with -a taking priority.
  • Fixed some bugs when retrying download data from GSA.

v1.5.0

26 Dec 02:46
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  • Fixed the bugs mentioned in #19.

v1.4.0

16 Dec 09:28
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  • Fixed the bugs mentioned in #16 and #17.

v1.3.0

21 Nov 01:49
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  • Dependency update for aspera-cli: The version requirement for aspera-cli has been updated from aspera-cli to aspera-cli=4.14.0.

v1.2.0

23 Oct 03:19
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  • New -s, --speed option to set the download speed limit (MB/s) (default: 1000 MB/s). Such as iseq -i SRR7706354 -s 10
  • Dependency update for sra-tools: The version requirement for sra-tools has been updated from sra-tools=2.11 to sra-tools>=2.11.0.