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CHANGELOG.md

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Changelog

Version 0.5.0

  • chore: Remove Python 3.8 (EOL)
  • precommit: Replace docformatter with ruff's formatter

Version 0.4.1 - 0.4.3

  • Access an experiment by index.
  • Helper methods to create sample mapping if not provided.
  • Subset operations on samples.
  • Update sphinx configuration to run snippets in the documentation.

Version 0.4.0

This is a complete rewrite of the package, following the functional paradigm from our developer notes.

  • column_data and sample_map are expected to be BiocFrame objects and will be converted if a pandas DataFrame is provided. This will allows us to reduce complexity and provide consistent downstream operations.
  • A sample_map will be created by default if both column_data and sample_map are None.
  • A warning is raised if column_names are empty for an experiment.
  • A warning is raised if column_data contains duplicate row names.
  • Streamlines subset operation.
  • Reduce dependency on a number of external packages.
  • Update docstrings, tests and docs.

Version 0.3.0

This release migrates the package to a more palatable Google's Python style guide. A major modification to the package is with casing, all camelCase methods, functions and parameters are now snake_case.

In addition, docstrings and documentation has been updated to use sphinx's features of linking objects to their types. Sphinx now also documents private and special dunder methods (e.g. __getitem__, __copy__ etc). Intersphinx has been updated to link to references from dependent packages.

In addition, pyscaffold has been updated to use "myst-parser" as the markdown compiler instead of rst. As part of the pyscaffold setup, one may use pre-commits to run some of the routine tasks of linting and formatting before every commit. While this is sometimes annoying and can be ignored with --no-verify, it brings some consistency to the code base.

Version 0.2.0

  • Rewriting MAE class
    • add more methods especially slicing
  • more robust tests
  • updated documentation, tutorial

Version 0.1

  • Initialize MAE class
  • Tests
  • Documentation