Update to Dockstore API #2

	name: Update to Dockstore API

	on: workflow_dispatch

	jobs:
	apiUpdate:
	runs-on: ubuntu-latest
	container: bioconductor/bioconductor_docker:devel

	env:
	R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

	steps:
	- name: Checkout Repository
	uses: actions/checkout@v3
	with:
	fetch-depth: 0

	- name: Install Dependencies
	run: Rscript -e "install.packages('yaml')"

	- name: Install lucybot converter
	run: npm install -g api-spec-converter

	- name: Add safe directory
	run: git config --global --add safe.directory /__w/AnVIL/AnVIL

	- name: Download API and write MD5
	run: Rscript -e "source('./inst/scripts/update_dockstore_api.R')"

	- name: Commit changes
	if: ${{ success() }}
	uses: EndBug/add-and-commit@v9
	with:
	add: ["inst/service/dockstore/api.yaml", "R/Dockstore.R"]
Check failure on line 36 in .github/workflows/update_api.yml View workflow run for this annotation GitHub Actions / Update to Dockstore API Invalid workflow file `The workflow is not valid. .github/workflows/update_api.yml (Line: 36, Col: 16): A sequence was not expected`
	message: 'Update API'

	- name: Push action
	uses: ad-m/github-push-action@master
	with:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

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