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make dualrun and nrun run locally #12

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cattabiani opened this issue Sep 30, 2024 · 0 comments
Open

make dualrun and nrun run locally #12

cattabiani opened this issue Sep 30, 2024 · 0 comments
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@cattabiani
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this requires the new circuit from: https://bbpteam.epfl.ch/project/issues/browse/BBPP40-506

@cattabiani cattabiani self-assigned this Sep 30, 2024
@cattabiani cattabiani mentioned this issue Sep 30, 2024
18 tasks
cattabiani added a commit that referenced this issue Dec 3, 2024
Reactivate integration tests with new CI and detach from BB5

- Solved issue #12.
- Updated metabolism manager for new CI.
- Improved CLI to report full error stack on failure.
- Tested and integrated new CI as default.
- Removed `bluepysnap` dependency.
- Re-enabled steps integration tests.
- Integrated metabolism into MultiscaleRun:
  - Organized configs/templates and cleaned `data`.
  - Moved metabolism data to `data/metabolism`.
  - Updated to use `pkg_path` for flexibility.
  - Relocated metabolism model to `metabolism/ODE_system.jl`.
  - Fixed templates and pathing in pytests.
- Updated GitLab CI for the new structure.
- Added young and old ODE_system models.
- Verified new CI is smaller with stats.
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