Warning

The Blue Brain Project concluded in December 2024, so development has ceased under the BlueBrain GitHub organization. Future development will take place at: https://github.com/openbraininstitute/connectome-tools

Introduction

connectome-tools package is a collection of tools for specifying and analysing circuit connectivity.

At the moment these tools are provided:

connectome-stats

Sampling some connectome statistics from the circuit.

s2f-recipe

Writing synapse pruning recipe used by Functionalizer

s2f-recipe-merge

Wrapping and executing s2f-recipe for different regions, merging the results into a single recipe.

Installation

pip install

connectome-tools is also distributed as a Python package:

$ git clone https://github.com/BlueBrain/connectome-tools
$ pip install -e connectome-tools

Acknowledgements

The development of this software was supported by funding to the Blue Brain Project, a research center of the École polytechnique fédérale de Lausanne (EPFL), from the Swiss government’s ETH Board of the Swiss Federal Institutes of Technology.

For license see LICENSE.txt.

connectome-tools is a refactored subset of bluerecipe toolset originally developed by Michael Reimann.

Copyright (c) 2013-2024 Blue Brain Project/EPFL