From 4aaab014b933514dedf152377e682057624bb915 Mon Sep 17 00:00:00 2001 From: wojcieko Date: Thu, 6 Feb 2025 16:36:56 +0100 Subject: [PATCH] - CRAN submission prep --- NEWS.md | 4 +- cran-comments.md | 193 +++++++++++------------------------------------ 2 files changed, 46 insertions(+), 151 deletions(-) diff --git a/NEWS.md b/NEWS.md index 40579d6..63465e9 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,6 +1,6 @@ -## BayesianMCPMod 1.0.2 (xx-Feb-2024) +## BayesianMCPMod 1.0.2 (06-Feb-2024) -- Addition of new vignette comparing frequentist and Bayesian MCPMod (using vague priors) +- Addition of new vignette comparing frequentist and Bayesian MCPMod using vague priors - Extension of getPosterior to allow the input of a fully populated variance-covariance matrix - Added the non-monotonic model shapes beta and quadratic - New argument in assessDesign() to skip the Mod part of Bayesian MCPMod diff --git a/cran-comments.md b/cran-comments.md index 7faf258..7aa1e5c 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -5,164 +5,59 @@ 'Stephan Wojciekowski ' ## Test environments -- aarch64-apple-darwin20, R 4.2.1 (local) -- x86_64-w64-mingw32, (unstable) (R version 4.4.0 alpha, 2024-04-02 r86304 ucrt) -- r-release-macosx-arm64 | R version 4.3.3 (2024-02-29) -- R-hub Windows Server 2022, R-devel, 64 bit -- R-hub Ubuntu Linux 20.04.1 LTS, R-release -- R-hub Fedora Linux, R-devel +- Local aarch64-apple-darwin20, R 4.4.2 + +- Winbuilder x86_64-w64-mingw32, Windows Server, R under development (unstable) (2025-02-05 r87692 ucrt) +- Macbuilder aarch64-apple-darwin20, macOS Ventura 13.3.1, R version 4.4.2 (2024-10-31) + +- Github Linux / ubuntu-latest (release) +- Github Mac / macos-latest (release) +- Github windows, all R versions on GitHub Actions windows-latest ## R CMD check results -### aarch64-apple-darwin20, R 4.2.1 (local) +### Local aarch64-apple-darwin20, Windows Server, R 4.4.2 0 errors √ | 0 warnings √ | 0 notes √ -### x86_64-w64-mingw32, (unstable) (R version 4.4.0 alpha, 2024-04-02 r86304 ucrt) - -0 errors | 0 warnings | 1 note - -- checking CRAN incoming feasibility - - Maintainer: 'Stephan Wojciekowski ' - - New submission - - Package was archived on CRAN - - Possibly misspelled words in DESCRIPTION: - - MCPMod (3:18, 12:23, 14:17, 16:56) - - Pinheiro (25:25) - - Schmidli (21:15) - - al (12:44, 21:27, 25:37) - - et (12:41, 21:24, 25:34) - - => marked spelling is correct - - - CRAN repository db overrides: - X-CRAN-Comment: Archived on 2024-03-28 as issues were not corrected - in time. - -### r-release-macosx-arm64 | R version 4.3.3 (2024-02-29) - -0 errors | 0 warnings | 0 notes - -### R-hub Windows Server 2022, R-devel, 64 bit - -0 errors | 0 warnings | 5 notes - -- checking CRAN incoming feasibility - - Maintainer: 'Stephan Wojciekowski ' - - New submission - - Package was archived on CRAN - - Possibly misspelled words in DESCRIPTION: - - MCPMod (3:18, 12:23, 14:17, 16:56) - - Pinheiro (25:25) - - Schmidli (21:15) - - al (12:44, 21:27, 25:37) - - et (12:41, 21:24, 25:34) - - => marked spelling is correct - - - CRAN repository db overrides: - X-CRAN-Comment: Archived on 2024-03-28 as issues were not corrected - in time. - -- checking HTML version of manual ... NOTE - - Skipping checking math rendering: package 'V8' unavailable - - => R-hub induced note - -- checking for non-standard things in the check directory ... NOTE - - Found the following files/directories: - - ''NULL'' - - => R-hub induced note - -- checking for detritus in the temp directory ... NOTE - - Found the following files/directories: - - 'lastMiKTeXException' - - => R-hub induced note - -### R-hub Ubuntu Linux 20.04.1 LTS, R-release - -0 errors | 0 warnings | 5 notes - -- checking CRAN incoming feasibility - - Maintainer: 'Stephan Wojciekowski ' - - New submission - - Package was archived on CRAN - - Possibly misspelled words in DESCRIPTION: - - MCPMod (3:18, 12:23, 14:17, 16:56) - - Pinheiro (25:25) - - Schmidli (21:15) - - al (12:44, 21:27, 25:37) - - et (12:41, 21:24, 25:34) - - => marked spelling is correct - - - CRAN repository db overrides: - X-CRAN-Comment: Archived on 2024-03-28 as issues were not corrected - in time. - -- checking examples ... [11s/25s] NOTE - - Examples with CPU (user + system) or elapsed time > 5s - user system elapsed - getBootstrapQuantiles 5.78 0.141 13.032 - - => microbenchmarking the getBootstrapQuantiles() example locally: - Unit: seconds - min lq mean median uq max neval - 0.01434709 0.01472304 0.01566722 0.01491748 0.01517197 0.02247079 100 - -- checking HTML version of manual ... NOTE - - Skipping checking HTML validation: no command 'tidy' found - - Skipping checking math rendering: package 'V8' unavailable - - => R-hub induced note - -### R-hub Fedora Linux, R-devel - -0 errors | 0 warnings | 5 notes - -- checking CRAN incoming feasibility - - Maintainer: 'Stephan Wojciekowski ' - - New submission - - Package was archived on CRAN - - Possibly misspelled words in DESCRIPTION: - - MCPMod (3:18, 12:23, 14:17, 16:56) - - Pinheiro (25:25) - - Schmidli (21:15) - - al (12:44, 21:27, 25:37) - - et (12:41, 21:24, 25:34) - - => marked spelling is correct - - - CRAN repository db overrides: - X-CRAN-Comment: Archived on 2024-03-28 as issues were not corrected - in time. - -- checking examples ... [11s/25s] NOTE - - Examples with CPU (user + system) or elapsed time > 5s - user system elapsed - getBootstrapQuantiles 5.601 0.11 12.862 - - => microbenchmarking the getBootstrapQuantiles() example locally: - Unit: seconds - min lq mean median uq max neval - 0.01434709 0.01472304 0.01566722 0.01491748 0.01517197 0.02247079 100 - -- checking HTML version of manual ... NOTE - - Skipping checking HTML validation: no command 'tidy' found - - Skipping checking math rendering: package 'V8' unavailable - - => R-hub induced note - +### Winbuilder x86_64-w64-mingw32, macOS Ventura 13.3.1, R under development (unstable) (2025-02-05 r87692 ucrt) + +* DONE +Status: OK + +### Macbuilder aarch64-apple-darwin20, macOS Ventura 13.3.1, R version 4.4.2 (2024-10-31) + +* DONE +Status: OK + +### Github Linux / ubuntu-latest (release) + +* DONE +Status: OK + +### Github Mac / macos-latest (release) + +* DONE +Status: OK + +### Windows / windows-latest (release) + +* checking for detritus in the temp directory ... NOTE +Found the following files/directories: + 'Rscript420e8038' 'Rscripta4ce8028' +* DONE +Status: 1 NOTE + +-> This note seems is related with the parallelization on the github server and does not occur on the Winbuilder server. + ## From NEWS.md -### BayesianMCPMod 1.0.2 (xx-Feb-2024) +### BayesianMCPMod 1.0.2 (06-Feb-2024) -- Addition of new vignette comparing frequentist and Bayesian MCPMod (using vague priors) -- Extension of getPosterior to allow also input of fully populated variance-covariance matrices -- Added non-monotonic models (beta and quadratic) +- Addition of new vignette comparing frequentist and Bayesian MCPMod using vague priors +- Extension of getPosterior to allow the input of a fully populated variance-covariance matrix +- Added the non-monotonic model shapes beta and quadratic - New argument in assessDesign() to skip the Mod part of Bayesian MCPMod -- More tests +- Additional tests ### BayesianMCPMod 1.0.1 (03-Apr-2024)