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environment.yml
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name: vyvarium
channels:
- conda-forge
- defaults
dependencies:
- appnope=0.1.2=py38h50d1736_2
- asttokens=2.0.5=pyhd8ed1ab_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- ca-certificates=2021.10.8=h033912b_0
- certifi=2021.10.8=py38h50d1736_1
- debugpy=1.5.1=py38ha048514_0
- decorator=5.1.1=pyhd8ed1ab_0
- entrypoints=0.4=pyhd8ed1ab_0
- executing=0.8.3=pyhd8ed1ab_0
- ipykernel=6.9.1=py38h5fd9f69_0
- ipython=8.1.1=py38h50d1736_0
- jedi=0.18.1=py38h50d1736_0
- jupyter_client=7.1.2=pyhd8ed1ab_0
- jupyter_core=4.9.2=py38h50d1736_0
- libcxx=12.0.0=h2f01273_0
- libedit=3.1.20210910=hca72f7f_0
- libffi=3.2.1=h0a44026_1007
- libsodium=1.0.18=hbcb3906_1
- matplotlib-inline=0.1.3=pyhd8ed1ab_0
- ncurses=6.3=hca72f7f_2
- nest-asyncio=1.5.4=pyhd8ed1ab_0
- openssl=1.1.1l=h0d85af4_0
- parso=0.8.3=pyhd8ed1ab_0
- pexpect=4.8.0=pyh9f0ad1d_2
- pickleshare=0.7.5=py_1003
- pip=21.2.4=py38hecd8cb5_0
- prompt-toolkit=3.0.27=pyha770c72_0
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- pygments=2.11.2=pyhd8ed1ab_0
- python=3.8.0=h359304d_2
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python_abi=3.8=2_cp38
- pyzmq=22.3.0=py38hd3b92b6_1
- readline=7.0=h1de35cc_5
- setuptools=58.0.4=py38hecd8cb5_0
- six=1.16.0=pyh6c4a22f_0
- sqlite=3.33.0=hffcf06c_0
- stack_data=0.2.0=pyhd8ed1ab_0
- tk=8.6.11=h7bc2e8c_0
- tornado=6.1=py38h96a0964_2
- traitlets=5.1.1=pyhd8ed1ab_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- wheel=0.37.1=pyhd3eb1b0_0
- xz=5.2.5=h1de35cc_0
- zeromq=4.3.4=he49afe7_1
- zlib=1.2.11=h4dc903c_4
- pip:
- attrs==21.4.0
- beautifulsoup4==4.10.0
- biocrnpyler==1.1.1
- bioscrape==1.0.4
- cycler==0.11.0
- cython==0.29.28
- emcee==3.1.1
- fonttools==4.29.1
- iniconfig==1.1.1
- kiwisolver==1.3.2
- matplotlib==3.5.1
- mpmath==1.2.1
- networkx==2.7.1
- numpy==1.22.2
- packaging==21.3
- pandas==1.4.1
- pillow==9.0.1
- pint==0.18
- pluggy==1.0.0
- py==1.11.0
- pymongo==4.0.2
- pyparsing==3.0.7
- pytest==7.0.1
- python-libsbml==5.19.3
- pytz==2021.3
- scipy==1.8.0
- soupsieve==2.3.1
- sympy==1.10
- tomli==2.0.1
- vivarium-bioscrape==0.0.0.7
- vivarium-core==1.1.0
prefix: /Users/chenlianfu/miniconda3/envs/vyvarium