Skip to content

Commit

Permalink
Merge pull request #3524 from CliMA/js/v0282
Browse files Browse the repository at this point in the history
tag v0.28.2
  • Loading branch information
juliasloan25 authored Jan 17, 2025
2 parents ab37d6d + 6172079 commit db557a5
Show file tree
Hide file tree
Showing 8 changed files with 533 additions and 450 deletions.
10 changes: 7 additions & 3 deletions NEWS.md
Original file line number Diff line number Diff line change
Expand Up @@ -5,15 +5,19 @@ Main
-------


v0.28.1
v0.28.2
-------
### Features

### Add van Leer class operator

Added a new vertical transport option `vanleer_limiter` (for tracer and energy variables)
which uses methods described in Lin et al. (1994) to apply slope-limited upwinding. Adds
operator
which uses methods described in Lin et al. (1994) to apply slope-limited upwinding. Adds
operator

v0.28.1
-------
### Features

### Read initial conditions from NetCDF files

Expand Down
2 changes: 1 addition & 1 deletion Project.toml
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
name = "ClimaAtmos"
uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
authors = ["Climate Modeling Alliance"]
version = "0.28.1"
version = "0.28.2"

[deps]
ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63"
Expand Down
140 changes: 73 additions & 67 deletions docs/Manifest-v1.11.toml
Original file line number Diff line number Diff line change
Expand Up @@ -37,24 +37,24 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
version = "0.4.5"

[[deps.Accessors]]
deps = ["CompositionsBase", "ConstructionBase", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown"]
git-tree-sha1 = "96bed9b1b57cf750cca50c311a197e306816a1cc"
deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"]
git-tree-sha1 = "0ba8f4c1f06707985ffb4804fdad1bf97b233897"
uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697"
version = "0.1.39"
version = "0.1.41"

[deps.Accessors.extensions]
AccessorsAxisKeysExt = "AxisKeys"
AccessorsDatesExt = "Dates"
AccessorsIntervalSetsExt = "IntervalSets"
AccessorsStaticArraysExt = "StaticArrays"
AccessorsStructArraysExt = "StructArrays"
AccessorsTestExt = "Test"
AccessorsUnitfulExt = "Unitful"
AxisKeysExt = "AxisKeys"
IntervalSetsExt = "IntervalSets"
LinearAlgebraExt = "LinearAlgebra"
StaticArraysExt = "StaticArrays"
StructArraysExt = "StructArrays"
TestExt = "Test"
UnitfulExt = "Unitful"

[deps.Accessors.weakdeps]
AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5"
Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953"
LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
Requires = "ae029012-a4dd-5104-9daa-d747884805df"
StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a"
Expand Down Expand Up @@ -257,9 +257,9 @@ version = "0.5.0"

[[deps.CFTime]]
deps = ["Dates", "Printf"]
git-tree-sha1 = "5afb5c5ba2688ca43a9ad2e5a91cbb93921ccfa1"
git-tree-sha1 = "937628bf8b377208ac359f57314fd85d3e0165d9"
uuid = "179af706-886a-5703-950a-314cd64e0468"
version = "0.1.3"
version = "0.1.4"

[[deps.CPUSummary]]
deps = ["CpuId", "IfElse", "PrecompileTools", "Static"]
Expand Down Expand Up @@ -315,12 +315,13 @@ weakdeps = ["SparseArrays"]
deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "LazyArtifacts", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "RRTMGP", "Random", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "UnrolledUtilities", "YAML"]
path = ".."
uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
version = "0.28.1"
version = "0.28.2"

[[deps.ClimaComms]]
git-tree-sha1 = "ec303a4a66dc0a0ebe15a639a7e685afeaa0daef"
deps = ["Adapt", "Logging", "LoggingExtras"]
git-tree-sha1 = "d29ca07d91e6ca6c0a3649ad6cf37f2634951fd3"
uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d"
version = "0.6.4"
version = "0.6.5"

[deps.ClimaComms.extensions]
ClimaCommsCUDAExt = "CUDA"
Expand Down Expand Up @@ -402,9 +403,9 @@ version = "0.1.13"

[[deps.CloudMicrophysics]]
deps = ["ClimaParams", "DocStringExtensions", "ForwardDiff", "HCubature", "LazyArtifacts", "QuadGK", "RootSolvers", "SpecialFunctions", "Thermodynamics"]
git-tree-sha1 = "e3b2ae212b68aea23d11c03300abb1268a56af87"
git-tree-sha1 = "ce0a087e03585d89fa925ffdb18246309ad40e55"
uuid = "6a9e3e04-43cd-43ba-94b9-e8782df3c71b"
version = "0.22.5"
version = "0.22.6"

[deps.CloudMicrophysics.extensions]
EmulatorModelsExt = ["DataFrames", "MLJ"]
Expand All @@ -420,10 +421,10 @@ uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
version = "0.7.6"

[[deps.ColorBrewer]]
deps = ["Colors", "JSON", "Test"]
git-tree-sha1 = "61c5334f33d91e570e1d0c3eb5465835242582c4"
deps = ["Colors", "JSON"]
git-tree-sha1 = "e771a63cc8b539eca78c85b0cabd9233d6c8f06f"
uuid = "a2cac450-b92f-5266-8821-25eda20663c8"
version = "0.4.0"
version = "0.4.1"

[[deps.ColorSchemes]]
deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
Expand Down Expand Up @@ -538,9 +539,9 @@ version = "4.1.1"

[[deps.CubedSphere]]
deps = ["TaylorSeries"]
git-tree-sha1 = "51bb25de518b4c62b7cdf26e5fbb84601bb27a60"
git-tree-sha1 = "10874d1500159336863decaef665ab54805be29c"
uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb"
version = "0.3.0"
version = "0.3.1"

[[deps.DataAPI]]
git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe"
Expand Down Expand Up @@ -622,10 +623,10 @@ uuid = "b552c78f-8df3-52c6-915a-8e097449b14b"
version = "1.15.1"

[[deps.DiskArrays]]
deps = ["LRUCache", "OffsetArrays"]
git-tree-sha1 = "e0e89a60637a62d13aa2107f0acd169b9b9b77e7"
deps = ["LRUCache", "Mmap", "OffsetArrays"]
git-tree-sha1 = "90fc70a19edc4e59f22b2b9b8ad46e3d116c6aa7"
uuid = "3c3547ce-8d99-4f5e-a174-61eb10b00ae3"
version = "0.4.6"
version = "0.4.7"

[[deps.Distributed]]
deps = ["Random", "Serialization", "Sockets"]
Expand All @@ -634,9 +635,9 @@ version = "1.11.0"

[[deps.Distributions]]
deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"]
git-tree-sha1 = "4b138e4643b577ccf355377c2bc70fa975af25de"
git-tree-sha1 = "7901a6117656e29fa2c74a58adb682f380922c47"
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
version = "0.25.115"
version = "0.25.116"

[deps.Distributions.extensions]
DistributionsChainRulesCoreExt = "ChainRulesCore"
Expand Down Expand Up @@ -720,9 +721,9 @@ uuid = "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636"
version = "0.8.5"

[[deps.Extents]]
git-tree-sha1 = "81023caa0021a41712685887db1fc03db26f41f5"
git-tree-sha1 = "063512a13dbe9c40d999c439268539aa552d1ae6"
uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910"
version = "0.1.4"
version = "0.1.5"

[[deps.FFMPEG_jll]]
deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"]
Expand Down Expand Up @@ -911,9 +912,9 @@ uuid = "d54b0c1a-921d-58e0-8e36-89d8069c0969"
version = "0.5.8"

[[deps.GeoFormatTypes]]
git-tree-sha1 = "59107c179a586f0fe667024c5eb7033e81333271"
git-tree-sha1 = "ce573eab15760315756de2c82df7406c870c7187"
uuid = "68eda718-8dee-11e9-39e7-89f7f65f511f"
version = "0.4.2"
version = "0.4.3"

[[deps.GeoInterface]]
deps = ["DataAPI", "Extents", "GeoFormatTypes"]
Expand Down Expand Up @@ -1274,9 +1275,9 @@ weakdeps = ["Serialization"]

[[deps.LZO_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "854a9c268c43b77b0a27f22d7fab8d33cdb3a731"
git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a"
uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac"
version = "2.10.2+3"
version = "2.10.3+0"

[[deps.LaTeXStrings]]
git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c"
Expand Down Expand Up @@ -1359,15 +1360,15 @@ version = "1.51.1+0"

[[deps.Libiconv_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "61dfdba58e585066d8bce214c5a51eaa0539f269"
git-tree-sha1 = "be484f5c92fad0bd8acfef35fe017900b0b73809"
uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531"
version = "1.17.0+1"
version = "1.18.0+0"

[[deps.Libmount_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "84eef7acd508ee5b3e956a2ae51b05024181dee0"
git-tree-sha1 = "89211ea35d9df5831fca5d33552c02bd33878419"
uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9"
version = "2.40.2+2"
version = "2.40.3+0"

[[deps.Libtiff_jll]]
deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"]
Expand All @@ -1377,9 +1378,9 @@ version = "4.7.1+0"

[[deps.Libuuid_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "edbf5309f9ddf1cab25afc344b1e8150b7c832f9"
git-tree-sha1 = "e888ad02ce716b319e6bdb985d2ef300e7089889"
uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700"
version = "2.40.2+2"
version = "2.40.3+0"

[[deps.LinearAlgebra]]
deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"]
Expand Down Expand Up @@ -1422,6 +1423,12 @@ version = "0.3.29"
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
version = "1.11.0"

[[deps.LoggingExtras]]
deps = ["Dates", "Logging"]
git-tree-sha1 = "f02b56007b064fbfddb4c9cd60161b6dd0f40df3"
uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36"
version = "1.1.0"

[[deps.Lz4_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "191686b1ac1ea9c89fc52e996ad15d1d241d1e33"
Expand Down Expand Up @@ -1458,10 +1465,9 @@ uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748"
version = "5.5.1+2"

[[deps.MacroTools]]
deps = ["Markdown", "Random"]
git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df"
git-tree-sha1 = "72aebe0b5051e5143a079a4685a46da330a40472"
uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
version = "0.5.13"
version = "0.5.15"

[[deps.Makie]]
deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageBase", "ImageIO", "InteractiveUtils", "Interpolations", "IntervalSets", "InverseFunctions", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"]
Expand Down Expand Up @@ -1570,9 +1576,9 @@ version = "3.1.0+2"

[[deps.NaNMath]]
deps = ["OpenLibm_jll"]
git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4"
git-tree-sha1 = "030ea22804ef91648f29b7ad3fc15fa49d0e6e71"
uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
version = "1.0.2"
version = "1.0.3"

[[deps.NetCDF_jll]]
deps = ["Artifacts", "Blosc_jll", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "OpenMPI_jll", "XML2_jll", "Zlib_jll", "Zstd_jll", "libzip_jll"]
Expand Down Expand Up @@ -1800,9 +1806,9 @@ uuid = "92933f4c-e287-5a05-a399-4b506db050ca"
version = "1.10.2"

[[deps.PtrArrays]]
git-tree-sha1 = "77a42d78b6a92df47ab37e177b2deac405e1c88f"
git-tree-sha1 = "1d36ef11a9aaf1e8b74dacc6a731dd1de8fd493d"
uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d"
version = "1.2.1"
version = "1.3.0"

[[deps.QOI]]
deps = ["ColorTypes", "FileIO", "FixedPointNumbers"]
Expand Down Expand Up @@ -1953,9 +1959,9 @@ version = "0.7.0"

[[deps.SIMD]]
deps = ["PrecompileTools"]
git-tree-sha1 = "52af86e35dd1b177d051b12681e1c581f53c281b"
git-tree-sha1 = "fea870727142270bdf7624ad675901a1ee3b4c87"
uuid = "fdea26ae-647d-5447-a871-4b548cad5224"
version = "3.7.0"
version = "3.7.1"

[[deps.SIMDTypes]]
git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c"
Expand All @@ -1964,9 +1970,9 @@ version = "0.1.0"

[[deps.SciMLBase]]
deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"]
git-tree-sha1 = "3e5a9c5d6432b77a271646b4ada2573f239ac5c4"
git-tree-sha1 = "a263684f4134d50fe1863184281cc04a787a96a2"
uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
version = "2.70.0"
version = "2.71.0"

[deps.SciMLBase.extensions]
SciMLBaseChainRulesCoreExt = "ChainRulesCore"
Expand Down Expand Up @@ -2254,9 +2260,9 @@ version = "1.10.0"

[[deps.TaylorSeries]]
deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"]
git-tree-sha1 = "90c9bc500f4c5cdd235c81503ec91b2048f06423"
git-tree-sha1 = "267e579c6aa0e1605bb5dc681996bb1e3a43c740"
uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea"
version = "0.17.8"
version = "0.18.2"

[deps.TaylorSeries.extensions]
TaylorSeriesIAExt = "IntervalArithmetic"
Expand Down Expand Up @@ -2441,15 +2447,15 @@ version = "1.8.6+3"

[[deps.Xorg_libXau_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "2b0e27d52ec9d8d483e2ca0b72b3cb1a8df5c27a"
git-tree-sha1 = "e9216fdcd8514b7072b43653874fd688e4c6c003"
uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec"
version = "1.0.11+3"
version = "1.0.12+0"

[[deps.Xorg_libXdmcp_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "02054ee01980c90297412e4c809c8694d7323af3"
git-tree-sha1 = "89799ae67c17caa5b3b5a19b8469eeee474377db"
uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05"
version = "1.1.4+3"
version = "1.1.5+0"

[[deps.Xorg_libXext_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"]
Expand All @@ -2465,9 +2471,9 @@ version = "0.9.11+1"

[[deps.Xorg_libpthread_stubs_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "fee57a273563e273f0f53275101cd41a8153517a"
git-tree-sha1 = "c57201109a9e4c0585b208bb408bc41d205ac4e9"
uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74"
version = "0.1.1+3"
version = "0.1.2+0"

[[deps.Xorg_libxcb_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"]
Expand All @@ -2477,9 +2483,9 @@ version = "1.17.0+3"

[[deps.Xorg_xtrans_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "b9ead2d2bdb27330545eb14234a2e300da61232e"
git-tree-sha1 = "6dba04dbfb72ae3ebe5418ba33d087ba8aa8cb00"
uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10"
version = "1.5.0+3"
version = "1.5.1+0"

[[deps.YAML]]
deps = ["Base64", "Dates", "Printf", "StringEncodings"]
Expand All @@ -2506,9 +2512,9 @@ version = "0.2.3+0"

[[deps.libaec_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "46bf7be2917b59b761247be3f317ddf75e50e997"
git-tree-sha1 = "f5733a5a9047722470b95a81e1b172383971105c"
uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0"
version = "1.1.2+2"
version = "1.1.3+0"

[[deps.libaom_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
Expand All @@ -2535,15 +2541,15 @@ version = "2.0.3+0"

[[deps.libpng_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
git-tree-sha1 = "b7bfd3ab9d2c58c3829684142f5804e4c6499abc"
git-tree-sha1 = "d7b5bbf1efbafb5eca466700949625e07533aff2"
uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
version = "1.6.45+0"
version = "1.6.45+1"

[[deps.libsixel_jll]]
deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "libpng_jll"]
git-tree-sha1 = "1e53ffe8941ee486739f3c0cf11208c26637becd"
git-tree-sha1 = "c1733e347283df07689d71d61e14be986e49e47a"
uuid = "075b6546-f08a-558a-be8f-8157d0f608a5"
version = "1.10.4+0"
version = "1.10.5+0"

[[deps.libvorbis_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"]
Expand Down
Loading

2 comments on commit db557a5

@juliasloan25
Copy link
Member Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@JuliaRegistrator
Copy link

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Registration pull request created: JuliaRegistries/General/123209

Tip: Release Notes

Did you know you can add release notes too? Just add markdown formatted text underneath the comment after the text
"Release notes:" and it will be added to the registry PR, and if TagBot is installed it will also be added to the
release that TagBot creates. i.e.

@JuliaRegistrator register

Release notes:

## Breaking changes

- blah

To add them here just re-invoke and the PR will be updated.

Tagging

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if the Julia TagBot GitHub Action is installed, or can be done manually through the github interface, or via:

git tag -a v0.28.2 -m "<description of version>" db557a57b40a6d11bdb16e69fa05b00cbedb3ab1
git push origin v0.28.2

Please sign in to comment.