Merge pull request #994 from CliMA/aj/dycore_paper_changes

Update Manifests to dycore paper Land, Atmos and Thermo

experiments/ClimaCore/Manifest.toml

@@ -5,9 +5,9 @@ manifest_format = "2.0"
 project_hash = "6b9fec14119deb9fc14f5552a1a613fe7d4b1a07"
 
 [[deps.ADTypes]]
-git-tree-sha1 = "5a5eafb8344b81b8c2237f8a6f6b3602b3f6180e"
+git-tree-sha1 = "eea5d80188827b35333801ef97a40c2ed653b081"
 uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b"
-version = "1.8.1"
+version = "1.9.0"
 
     [deps.ADTypes.extensions]
     ADTypesChainRulesCoreExt = "ChainRulesCore"
@@ -158,9 +158,9 @@ version = "0.2.6"
 
 [[deps.Cairo_jll]]
 deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"]
-git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd"
+git-tree-sha1 = "009060c9a6168704143100f36ab08f06c2af4642"
 uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a"
-version = "1.18.0+2"
+version = "1.18.2+1"
 
 [[deps.ClimaComms]]
 git-tree-sha1 = "ec303a4a66dc0a0ebe15a639a7e685afeaa0daef"
@@ -177,9 +177,9 @@ version = "0.6.4"
 
 [[deps.ClimaCore]]
 deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "StaticArrays", "Statistics", "Unrolled"]
-git-tree-sha1 = "527b11c35f00db0064b77a25fc881f2a2982abda"
+git-tree-sha1 = "6db06e8234dc67c021d636936803300ea710e0c6"
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
-version = "0.14.16"
+version = "0.14.18"
 
     [deps.ClimaCore.extensions]
     ClimaCoreCUDAExt = "CUDA"
@@ -191,9 +191,9 @@ version = "0.14.16"
 
 [[deps.ClimaTimeSteppers]]
 deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
-git-tree-sha1 = "396fb5706c55b40bf7ca30498c1ea2a045827f9a"
+git-tree-sha1 = "dbc1d2c495f118c36a83fa93cd5311fe3a32f615"
 uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79"
-version = "0.7.37"
+version = "0.7.38"
 
     [deps.ClimaTimeSteppers.extensions]
     ClimaTimeSteppersBenchmarkToolsExt = ["CUDA", "BenchmarkTools", "OrderedCollections", "StatsBase", "PrettyTables"]
@@ -362,10 +362,10 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"
 version = "1.9.1"
 
 [[deps.DiffEqBase]]
-deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"]
-git-tree-sha1 = "fa7d580038451a8df4434ef5b079ac9b2d486194"
+deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"]
+git-tree-sha1 = "9c36ac68cf6c59a1c2569aadd7a62c47ed5c8eb5"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.155.1"
+version = "6.158.1"
 
     [deps.DiffEqBase.extensions]
     DiffEqBaseCUDAExt = "CUDA"
@@ -428,9 +428,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56"
 version = "1.0.4"
 
 [[deps.EnzymeCore]]
-git-tree-sha1 = "8f205a601760f4798a10f138c3940f0451d95188"
+git-tree-sha1 = "9c3a42611e525352e9ad5e4134ddca5c692ff209"
 uuid = "f151be2c-9106-41f4-ab19-57ee4f262869"
-version = "0.7.8"
+version = "0.8.4"
 weakdeps = ["Adapt"]
 
     [deps.EnzymeCore.extensions]
@@ -604,9 +604,9 @@ version = "0.1.0"
 
 [[deps.Glib_jll]]
 deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"]
-git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba"
+git-tree-sha1 = "674ff0db93fffcd11a3573986e550d66cd4fd71f"
 uuid = "7746bdde-850d-59dc-9ae8-88ece973131d"
-version = "2.80.2+0"
+version = "2.80.5+0"
 
 [[deps.Graphite2_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -632,10 +632,10 @@ version = "0.17.2"
     MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
 
 [[deps.HDF5_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"]
-git-tree-sha1 = "38c8874692d48d5440d5752d6c74b0c6b0b60739"
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"]
+git-tree-sha1 = "82a471768b513dc39e471540fdadc84ff80ff997"
 uuid = "0234f1f7-429e-5d53-9886-15a909be8d59"
-version = "1.14.2+1"
+version = "1.14.3+3"
 
 [[deps.HTTP]]
 deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
@@ -651,9 +651,9 @@ version = "8.3.1+0"
 
 [[deps.Hwloc_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "5e19e1e4fa3e71b774ce746274364aef0234634e"
+git-tree-sha1 = "dd3b49277ec2bb2c6b94eb1604d4d0616016f7a6"
 uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8"
-version = "2.11.1+0"
+version = "2.11.2+0"
 
 [[deps.IfElse]]
 git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1"
@@ -715,9 +715,9 @@ version = "0.21.4"
 
 [[deps.JpegTurbo_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637"
+git-tree-sha1 = "25ee0be4d43d0269027024d75a24c24d6c6e590c"
 uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8"
-version = "3.0.3+0"
+version = "3.0.4+0"
 
 [[deps.JuliaNVTXCallbacks_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -727,9 +727,9 @@ version = "0.2.1+0"
 
 [[deps.KernelAbstractions]]
 deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"]
-git-tree-sha1 = "045d41a364a81e357757c566b5a69fd4a2a2c445"
+git-tree-sha1 = "04e52f596d0871fa3890170fa79cb15e481e4cd8"
 uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
-version = "0.9.26"
+version = "0.9.28"
 weakdeps = ["EnzymeCore", "LinearAlgebra", "SparseArrays"]
 
     [deps.KernelAbstractions.extensions]
@@ -909,9 +909,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 
 [[deps.LinearOperators]]
 deps = ["FastClosures", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "TimerOutputs"]
-git-tree-sha1 = "ae5d90280094348c32fda8bc8b5a88bb16514d43"
+git-tree-sha1 = "f55281226cdae8edea2c850fda88d8f5a03485b6"
 uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125"
-version = "2.8.0"
+version = "2.9.0"
 
     [deps.LinearOperators.extensions]
     LinearOperatorsCUDAExt = "CUDA"
@@ -955,9 +955,9 @@ version = "0.4.17"
 
 [[deps.MPICH_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
-git-tree-sha1 = "19d4bd098928a3263693991500d05d74dbdc2004"
+git-tree-sha1 = "7715e65c47ba3941c502bffb7f266a41a7f54423"
 uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4"
-version = "4.2.2+0"
+version = "4.2.3+0"
 
 [[deps.MPIPreferences]]
 deps = ["Libdl", "Preferences"]
@@ -967,9 +967,9 @@ version = "0.1.11"
 
 [[deps.MPItrampoline_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
-git-tree-sha1 = "8c35d5420193841b2f367e658540e8d9e0601ed0"
+git-tree-sha1 = "70e830dab5d0775183c99fc75e4c24c614ed7142"
 uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748"
-version = "5.4.0+0"
+version = "5.5.1+0"
 
 [[deps.MacroTools]]
 deps = ["Markdown", "Random"]
@@ -1027,9 +1027,9 @@ uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221"
 version = "0.2.4"
 
 [[deps.MultiBroadcastFusion]]
-git-tree-sha1 = "19b2f184b5882538bee0d5355b152212110e0fd2"
+git-tree-sha1 = "c8c2e7161cff6428b46318c89938b52c34ec6661"
 uuid = "c3c07f87-98de-43f2-a76f-835b330b2cbb"
-version = "0.3.1"
+version = "0.3.2"
 
     [deps.MultiBroadcastFusion.extensions]
     MultiBroadcastFusionCUDAExt = ["CUDA", "Adapt"]
@@ -1077,10 +1077,10 @@ uuid = "05823500-19ac-5b8b-9628-191a04bc5112"
 version = "0.8.1+2"
 
 [[deps.OpenMPI_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML", "Zlib_jll"]
-git-tree-sha1 = "bfce6d523861a6c562721b262c0d1aaeead2647f"
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
+git-tree-sha1 = "e25c1778a98e34219a00455d6e4384e017ea9762"
 uuid = "fe0851c0-eecd-5654-98d4-656369965a5c"
-version = "5.0.5+0"
+version = "4.1.6+0"
 
 [[deps.OpenSSL]]
 deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"]
@@ -1350,9 +1350,9 @@ version = "0.1.0"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
-git-tree-sha1 = "71857d6bab17e7ac6802d86ffcc75423b8c1d812"
+git-tree-sha1 = "50ed64cd5ad79b0bef71fdb6a11d10c3448bfef0"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.54.0"
+version = "2.56.1"
 
     [deps.SciMLBase.extensions]
     SciMLBaseChainRulesCoreExt = "ChainRulesCore"
@@ -1517,9 +1517,9 @@ version = "7.2.1+1"
 
 [[deps.SymbolicIndexingInterface]]
 deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"]
-git-tree-sha1 = "988e04b34a4c3b824fb656f542473df99a4f610d"
+git-tree-sha1 = "0225f7c62f5f78db35aae6abb2e5cabe38ce578f"
 uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5"
-version = "0.3.30"
+version = "0.3.31"
 
 [[deps.TOML]]
 deps = ["Dates"]
@@ -1579,19 +1579,14 @@ version = "0.5.2"
 
 [[deps.TimerOutputs]]
 deps = ["ExprTools", "Printf"]
-git-tree-sha1 = "5a13ae8a41237cff5ecf34f73eb1b8f42fff6531"
+git-tree-sha1 = "3a6f063d690135f5c1ba351412c82bae4d1402bf"
 uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
-version = "0.5.24"
+version = "0.5.25"
 
 [[deps.TranscodingStreams]]
-git-tree-sha1 = "e84b3a11b9bece70d14cce63406bbc79ed3464d2"
+git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.11.2"
-
-[[deps.Tricks]]
-git-tree-sha1 = "7822b97e99a1672bfb1b49b668a6d46d58d8cbcb"
-uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775"
-version = "0.1.9"
+version = "0.11.3"
 
 [[deps.TruncatedStacktraces]]
 deps = ["InteractiveUtils", "MacroTools", "Preferences"]
@@ -1854,9 +1849,9 @@ version = "1.2.13+1"
 
 [[deps.Zstd_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b"
+git-tree-sha1 = "555d1076590a6cc2fdee2ef1469451f872d8b41b"
 uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
-version = "1.5.6+0"
+version = "1.5.6+1"
 
 [[deps.eudev_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"]
@@ -1925,9 +1920,9 @@ version = "1.18.0+0"
 
 [[deps.libpng_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
-git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4"
+git-tree-sha1 = "b70c870239dc3d7bc094eb2d6be9b73d27bef280"
 uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
-version = "1.6.43+1"
+version = "1.6.44+0"
 
 [[deps.libvorbis_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"]