Gaussian filter and smoothing recipe #299
Workflow file for this run
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| # Run minimum dependency tests without conda | |
| name: TestCodeMinDeps | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| paths: | |
| - 'pyproject.toml' | |
| - '**.py' | |
| - '.github/workflows/runtests.yml' | |
| env: | |
| # used to manually trigger cache reset. Just increment if needed. | |
| CACHE_NUMBER: 1 | |
| # Cancel previous runs when this one starts. | |
| concurrency: | |
| group: TestCodeMinDeps-${{ github.event.pull_request.number || github.run_id }} | |
| cancel-in-progress: true | |
| jobs: | |
| # Runs the tests on combinations of the supported python/os matrix. | |
| test_code_min_deps: | |
| timeout-minutes: 25 | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.12'] | |
| # only run if CI isn't turned off | |
| if: github.event_name == 'push' || !contains(github.event.pull_request.labels.*.name, 'no_ci') | |
| env: | |
| # set path of test environment for caching | |
| prefix: ${{ startsWith(matrix.os, 'ubuntu') && '/usr/share/miniconda3/envs/dascore' | |
| || startsWith(matrix.os, 'macos') && '/Users/runner/miniconda3/envs/dascore' | |
| || startsWith(matrix.os, 'windows') && 'C:\Miniconda3\envs\dascore' }} | |
| # set individual cache key (only the start of it) | |
| cache_key: ${{ matrix.os }}-py${{ matrix.python-version }} | |
| # set conda environment file with dependencies | |
| env_file: "environment.yml" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: install dascore | |
| shell: bash -l {0} | |
| run: | | |
| export PATH="$pythonLocation:$PATH" | |
| python -m pip install -e .[test] | |
| - name: set data cache path | |
| shell: bash -l {0} | |
| run: | | |
| export PATH="$pythonLocation:$PATH" | |
| echo "DATA_CACHE_PATH=$(python -c "import pooch; print(pooch.os_cache('dascore'))")" >> $GITHUB_ENV | |
| - name: cache test data | |
| uses: actions/cache@v3 | |
| with: | |
| enableCrossOsArchive: true | |
| path: ${{ env.DATA_CACHE_PATH }} | |
| key: DATA_${{ env.CACHE_NUMBER }} | |
| - name: run test suite | |
| shell: bash -l {0} | |
| run: ./.github/test_code.sh | |
| # Runs examples in docstrings | |
| - name: test docstrings | |
| shell: bash -l {0} | |
| run: ./.github/test_code.sh doctest |