refactor actions (#477)

.github/actions/build-docs/action.yml

@@ -0,0 +1,20 @@
+name: "Build DASCore Docs"
+description: "Builds DASCore's Documentation."
+
+runs:
+  using: "composite"
+  steps:
+    - name: Install quarto
+      uses: quarto-dev/quarto-actions/setup@v2
+      with:
+        version: 1.3.450
+        tinytex: true
+
+    - name: print quarto version
+      run: |
+        quarto --version
+
+    - name: render API docs
+      shell: bash -l {0}
+      run: |
+        python scripts/build_api_docs.py

.github/actions/mamba-install-dascore/action.yml

@@ -0,0 +1,90 @@
+name: "Mamba Install"
+description: "Sets up mamba before installing DASCore's environment.yml file."
+inputs:
+  python-version:
+    description: "The python string of the version to install"
+    required: true
+
+  environment-file:
+    description: "The path to the environment file to use."
+    required: false
+    default: "environment.yml"
+
+  install-group-str:
+    description: "The string to use for specifying install groups"
+    default: "[dev]"
+    required: false
+
+  install-package:
+    description: "If true, install dascore"
+    default: true
+    required: false
+    type: boolean
+
+  cache-number:
+    description: "Cache number. Use != 1 to reset data cache"
+    required: false
+    default: 1
+
+runs:
+  using: "composite"
+  steps:
+    - name: Set up environment variable with date
+      shell: bash -l {0}
+      run: echo "CURRENT_DATE=$(date '+%Y-%m-%d')" >> $GITHUB_ENV
+
+    - uses: mamba-org/setup-micromamba@v2
+      with:
+        micromamba-version: '2.0.5-0' # versions: https://github.com/mamba-org/micromamba-releases
+        environment-file: ${{ inputs.environment-file }}
+        init-shell: >-
+          bash
+          powershell
+        cache-environment: true
+        cache-environment-key: environment-${{ env.CURRENT_DATE }}-${{ inputs.environment-file }}
+        post-cleanup: 'all'
+        create-args: >-
+          python=${{ inputs.python-version }}
+
+    # Not sure why this is needed but it appears to be the case
+    - name: fix env
+      shell: bash -l {0}
+      run: |
+        micromamba shell init --shell bash --root-prefix=~/micromamba
+        eval "$(micromamba shell hook --shell bash)"
+        micromamba activate dascore
+
+    - name: print python version
+      shell: bash -el {0}
+      run: |
+        python --version
+
+    - name: get tags for correct versioning
+      shell: bash -el {0}
+      run: |
+        git fetch --tags --force
+
+    - name: install dascore
+      if: "${{ inputs.install-package == 'true' }}"
+      shell: bash -l {0}
+      run: |
+        pip install -e .${{ inputs.install-group-str }}
+
+    - name: set data cache path
+      shell: bash -el {0}
+      run: |
+        echo "DATA_CACHE_PATH=$(python -c "import pooch; print(pooch.os_cache('dascore'))")" >> $GITHUB_ENV
+
+    - name: cache test data
+      uses: actions/cache@v3
+      with:
+        enableCrossOsArchive: true
+        path: ${{ env.DATA_CACHE_PATH }}
+        key: DATA_${{ inputs.cache-number }}
+
+    # Print out the package info for current environment
+    - name: print package info
+      shell: bash -el {0}
+      run: |
+        micromamba info
+        micromamba list

.github/min_deps_environment.yml

@@ -0,0 +1,7 @@
+name: dascore
+channels:
+  - conda-forge
+dependencies:
+  - pytables
+  - h5py
+  - pooch

.github/workflows/build_deploy_master_docs.yaml

@@ -34,50 +34,14 @@ jobs:
     steps:
       - uses: actions/checkout@v4
         with:
-          fetch-depth: 0
+          fetch-tags: "true"
 
-      - name: "get tags"
-        run: |
-          git fetch --tags --force # Retrieve annotated tags.
-
-      - uses: mamba-org/setup-micromamba@v1
+      - uses: ./.github/actions/mamba-install-dascore
         with:
-          micromamba-version: '1.5.8-0' # versions: https://github.com/mamba-org/micromamba-releases
-          environment-file: ./.github/doc_environment.yml
-          init-shell: >-
-            bash
-            powershell
-          cache-environment: true
-          post-cleanup: 'all'
-
-      # Not sure why this is needed but it appears to be the case
-      - name: fix env
-        shell: bash -l {0}
-        run: | 
-          micromamba shell init --shell bash --root-prefix=~/micromamba
-          eval "$(micromamba shell hook --shell bash)"
-          micromamba activate dascore
-
-      - name: install dascore with docbuild reqs
-        shell: bash -l {0}
-        run: |
-          conda install -c conda-forge pandoc
-          python -m pip install -e .[docs,all]
+          python-version: "3.12"
+          environment-file: '././github/doc_environment.yml'
 
-      - name: Install quarto
-        uses: quarto-dev/quarto-actions/setup@v2
-        with:
-          version: 1.3.450
-          tinytex: true
-
-      - name: print quarto version
-        run: |
-          quarto --version
-
-      - name: render API docs
-        shell: bash -l {0}
-        run: |
-          python scripts/build_api_docs.py
+      - uses: ./.github/actions/build-docs
 
       - name: publish docs to netlify
         shell: bash -l {0}

.github/workflows/build_deploy_stable_docs.yaml

@@ -32,55 +32,14 @@ jobs:
     steps:
       - uses: actions/checkout@v4
         with:
-          fetch-depth: 0
+          fetch-tags: "true"
 
-      - name: "get tags"
-        run: |
-          git fetch --tags --force # Retrieve annotated tags.
-
-      - name: Get tags
-        run: git fetch --tags origin
-
-      - uses: mamba-org/setup-micromamba@v2
+      - uses: ./.github/actions/mamba-install-dascore
         with:
-          micromamba-version: '2.0.2-1' # versions: https://github.com/mamba-org/micromamba-releases
-          environment-file: ./.github/doc_environment.yml
-          init-shell: >-
-            bash
-            powershell
-          cache-environment: true
-          post-cleanup: 'all'
-          cache-environment-key: environment-${{ steps.date.outputs.date }}
-
-      # Not sure why this is needed but it appears to be the case
-      - name: fix env
-        shell: bash -l {0}
-        run: | 
-          micromamba shell init --shell bash --root-prefix=~/micromamba
-          eval "$(micromamba shell hook --shell bash)"
-          micromamba activate dascore
-
-      - name: install dascore with docbuild reqs
-        shell: bash -l {0}
-        run: |
-          conda install -c conda-forge pandoc
-          python -m pip install -e .[docs,all]
-
-      - name: Install quarto
-        uses: quarto-dev/quarto-actions/setup@v2
-        with:
-          version: 1.3.450
-          tinytex: true
-
-      - name: print quarto version
-        run: |
-          quarto --version
+          python-version: "3.12"
+          environment-file: '././github/doc_environment.yml'
 
-      - name: Render Quarto Project
-        shell: bash -l {0}
-        run: |
-          python scripts/build_api_docs.py
-          quarto render docs
+      - uses: ./.github/actions/build-docs
 
       - name: Setup Pages
         uses: actions/configure-pages@v2

.github/workflows/get_coverage.yml

@@ -12,32 +12,9 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
-      - name: "get tags"
-        run: |
-          git fetch --tags --force # Retrieve annotated tags.
-
-      - uses: mamba-org/setup-micromamba@v1
+      - uses: ./.github/actions/min-deps-install-dascore
         with:
-          micromamba-version: '1.5.8-0' # versions: https://github.com/mamba-org/micromamba-releases
-          environment-file: environment.yml
-          init-shell: >-
-            bash
-            powershell
-          cache-environment: true
-          post-cleanup: 'all'
-
-      # Not sure why this is needed but it appears to be the case
-      - name: fix env
-        shell: bash -l {0}
-        run: | 
-          micromamba shell init --shell bash --root-prefix=~/micromamba
-          eval "$(micromamba shell hook --shell bash)"
-          micromamba activate dascore
-
-      - name: install dascore
-        shell: bash -l {0}
-        run: |
-          python -m pip install -e .[test]
+          python-version: ${{ matrix.python-version }}
 
       - name: run test suite
         shell: bash -l {0}

.github/workflows/lint.yml

@@ -11,10 +11,8 @@ jobs:
 
     steps:
       - uses: actions/checkout@v4
-
-      - name: "get tags"
-        run: |
-          git fetch --tags --force # Retrieve annotated tags.
+        with:
+          fetch-tags: 'true'
 
       - name: Install uv
         uses: astral-sh/setup-uv@v3

.github/workflows/run_min_dep_tests.yml

@@ -12,10 +12,6 @@ on:
       - '**.py'
       - '.github/workflows/run_min_dep_tests.yml'
 
-env:
-  # used to manually trigger cache reset. Just increment if needed.
-  CACHE_NUMBER: 1
-
 # Cancel previous runs when this one starts.
 concurrency:
   group: TestCodeMinDeps-${{ github.event.pull_request.number || github.run_id }}
@@ -35,63 +31,21 @@ jobs:
     # only run if CI isn't turned off
     if: github.event_name == 'push' || !contains(github.event.pull_request.labels.*.name, 'no_ci')
 
-    env:
-      # set conda environment file with dependencies
-      env_file: "environment.yml"
-
     steps:
       - uses: actions/checkout@v4
         with:
-          depth: 0
-
-      - name: "get tags"
-        run: |
-          git fetch --tags --force # Retrieve annotated tags.
+          fetch-tags: 'true'
 
-      - uses: mamba-org/setup-micromamba@v2
+      - uses: ./.github/actions/mamba-install-dascore
         with:
-          micromamba-version: '2.0.2-1' # versions: https://github.com/mamba-org/micromamba-releases
-          environment-file: environment.yml
-          init-shell: >-
-            bash
-            powershell
-          cache-environment: true
-          cache-environment-key: environment-${{ steps.date.outputs.date }}
-          post-cleanup: 'all'
-          create-args: >-
-            python=${{ matrix.python-version }}
-
-      # Not sure why this is needed but it appears to be the case.
-      # Also installs pytables so hdf5 gets installed on windows
-      - name: fix env
-        shell: bash -l {0}
-        run: | 
-          micromamba shell init --shell bash --root-prefix=~/micromamba
-          eval "$(micromamba shell hook --shell bash)"
-          micromamba activate dascore
-
-      - name: install hdf5
-        shell: bash -l {0}
-        run: |
-          micromamba install pytables
+          python-version: ${{ matrix.python-version }}
+          install-package: false
+          environment-file: './.github/min_deps_environment.yml'
 
       # Then switch over to uv. We can use this exclusively once we drop pytables.
       - name: Install uv
         uses: astral-sh/setup-uv@v3
 
-      - name: set data cache path
-        shell: bash -l {0}
-        run: |
-          export PATH="$pythonLocation:$PATH"
-          echo "DATA_CACHE_PATH=$(uv run --extra test python -c "import pooch; print(pooch.os_cache('dascore'))")" >> $GITHUB_ENV
-
-      - name: cache test data
-        uses: actions/cache@v3
-        with:
-          enableCrossOsArchive: true
-          path: ${{ env.DATA_CACHE_PATH }}
-          key: DATA_${{ env.CACHE_NUMBER }}
-
       - name: run test suite
         shell: bash -l {0}
         run: uv run --extra test --python ${{ matrix.python-version }} pytest -s --cov dascore --cov-append --cov-report=xml