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fixed bug with fgsea
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R/.SubramanianTest.R.un~

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R/SubramanianTest.R

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -41,7 +41,8 @@ setMethod("initialize", "SubramanianTest",
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.Object@gsea_power <- gsea_power
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.Object@element_score_type <- element_score_type
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.Object@test <- function(model) {
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listmodelDfFromFile <- model@gmt$list_of_values
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listmodelDfFromFile <- lapply(model@gmt$list_of_values,
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strsplit, split=" ", fixed=T)
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names(listmodelDfFromFile) <- model@gmt$ontology_id
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samplesToAnalisys <- model@element_scores
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names(samplesToAnalisys) <- model@element_names

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