Fix broken docs

Docs/source/developers/particles.rst

@@ -160,7 +160,7 @@ Attribute name      ``int``/``real``  Description                        Default
                                       when they were created.
 ==================  ================  =================================  ==============
 
-A Python example that adds runtime options can be found in :download:`Examples/Tests/particle_data_python <../../../Examples/Tests/particle_data_python/PICMI_inputs_prev_pos_2d.py>`
+A Python example that adds runtime options can be found in :download:`Examples/Tests/particle_data_python <../../../Examples/Tests/particle_data_python/inputs_test_2d_prev_positions_picmi.py>`
 
 .. note::
 

Docs/source/usage/examples.rst

@@ -21,8 +21,8 @@ Plasma-Based Acceleration
 .. toctree::
    :maxdepth: 1
 
-   examples/lwfa/README.rst
-   examples/pwfa/README.rst
+   examples/lwfa/README
+   examples/pwfa/README
    pwfa.rst
 
 
@@ -32,8 +32,8 @@ Laser-Plasma Interaction
 .. toctree::
    :maxdepth: 1
 
-   examples/laser_ion/README.rst
-   examples/plasma_mirror/README.rst
+   examples/laser_ion/README
+   examples/plasma_mirror/README
 
 
 Particle Accelerator & Beam Physics
@@ -42,8 +42,8 @@ Particle Accelerator & Beam Physics
 .. toctree::
    :maxdepth: 1
 
-   examples/gaussian_beam/README.rst
-   examples/beam-beam_collision/README.rst
+   examples/gaussian_beam/README
+   examples/beam_beam_collision/README
 
 
 High Energy Astrophysical Plasma Physics
@@ -52,7 +52,7 @@ High Energy Astrophysical Plasma Physics
 .. toctree::
    :maxdepth: 1
 
-   examples/ohm_solver_magnetic_reconnection/README.rst
+   examples/ohm_solver_magnetic_reconnection/README
 
 
 Microelectronics
@@ -78,8 +78,8 @@ Fundamental Plasma Physics
 .. toctree::
    :maxdepth: 1
 
-   examples/langmuir/README.rst
-   examples/capacitive_discharge/README.rst
+   examples/langmuir/README
+   examples/capacitive_discharge/README
 
 
 .. _examples-hybrid-model:
@@ -101,9 +101,9 @@ examples below were generated at that time.
 .. toctree::
    :maxdepth: 1
 
-   examples/ohm_solver_EM_modes/README.rst
-   examples/ohm_solver_ion_beam_instability/README.rst
-   examples/ohm_solver_ion_Landau_damping/README.rst
+   examples/ohm_solver_em_modes/README
+   examples/ohm_solver_ion_beam_instability/README
+   examples/ohm_solver_ion_Landau_damping/README
 
 
 High-Performance Computing and Numerics
@@ -115,7 +115,7 @@ While all prior examples are used for such studies as well, the examples here ne
 .. toctree::
    :maxdepth: 1
 
-   examples/uniform_plasma/README.rst
+   examples/uniform_plasma/README
 
 
 Manipulating fields via Python
@@ -127,11 +127,11 @@ Manipulating fields via Python
 
 An example of using Python to access the simulation charge density, solve the Poisson equation (using ``superLU``) and write the resulting electrostatic potential back to the simulation is given in the input file below. This example uses the ``fields.py`` module included in the ``pywarpx`` library.
 
-* :download:`Direct Poisson solver example <../../../Examples/Physics_applications/capacitive_discharge/PICMI_inputs_2d.py>`
+* :download:`Direct Poisson solver example <../../../Examples/Physics_applications/capacitive_discharge/inputs_test_2d_background_mcc_picmi.py>`
 
 An example of initializing the fields by accessing their data through Python, advancing the simulation for a chosen number of time steps, and plotting the fields again through Python. The simulation runs with 128 regular cells, 8 guard cells, and 10 PML cells, in each direction. Moreover, it uses div(E) and div(B) cleaning both in the regular grid and in the PML and initializes all available electromagnetic fields (E,B,F,G) identically.
 
-* :download:`Unit pulse with PML <../../../Examples/Tests/python_wrappers/PICMI_inputs_2d.py>`
+* :download:`Unit pulse with PML <../../../Examples/Tests/python_wrappers/inputs_test_2d_python_wrappers_picmi.py>`
 
 
 Many Further Examples, Demos and Tests

Docs/source/usage/examples/beam_beam_collision

@@ -0,0 +1 @@
+../../../../Examples/Physics_applications/beam_beam_collision/

Docs/source/usage/examples/ohm_solver_em_modes

@@ -0,0 +1 @@
+../../../../Examples/Tests/ohm_solver_em_modes/

Docs/source/usage/pwfa.rst

@@ -5,7 +5,7 @@ In-Depth: PWFA
 
 As described in the :doc:`../theory/intro`, one of the key applications of the WarpX exascale computing platform is in modelling future, compact and economic plasma-based accelerators.
 In this section we describe the simulation setup of a realistic *electron beam driven plasma wakefield accelerator* (PWFA) configuration.
-For illustration purposes the setup can be explored with **WarpX** using the example input file :download:`PWFA <../../../Examples/Physics_applications/plasma_acceleration/inputs_2d_boost>`.
+For illustration purposes the setup can be explored with **WarpX** using the example input file :download:`PWFA <../../../Examples/Physics_applications/plasma_acceleration/inputs_test_2d_plasma_acceleration_boosted>`.
 
 The simulation setup consists of 4 particle species: drive beam (driver), witness beam (beam), plasma electrons (plasma_e), and plasma ions (plasma_p).
 The species physical parameters are summarized in the following table.