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TADCoverage bed error when index is older than data file #108

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rikrdo89 opened this issue Mar 2, 2025 · 1 comment
Open

TADCoverage bed error when index is older than data file #108

rikrdo89 opened this issue Mar 2, 2025 · 1 comment
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@rikrdo89
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rikrdo89 commented Mar 2, 2025

When using add TADCoverage test.bed for the first time in the CLI, coolbox works fine and it creates a compressed bed file test.bed.bgz and its index test.bed.bgz.tbi. However, if I want to run coolbox again, it throws the error below:

[W::hts_idx_load3] The index file is older than the data file: test.bed.bgz.tbi

The only way to replot is by deleting all the bed file (the orginal, the compressed, and the indexed file) and start over by recreating the bed file. Is there a way to perhaps avoid this?

@zqbake
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zqbake commented Mar 4, 2025

Hi, this is a warning message and should not affect the execution of CoolBox. Please check the final output image generated by your command to confirm if everything works as expected. If the issue persists or affects the results, let me know.

@zqbake zqbake added the wontfix This will not be worked on label Mar 4, 2025
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