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genepio-simple.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/genepio/genepio-simple.owl#"
xml:base="http://purl.obolibrary.org/obo/genepio/genepio-simple.owl"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/"
xmlns:genepio="http://purl.obolibrary.org/obo/genepio/"
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/genepio/genepio-simple.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/genepio/releases/2024-12-18/genepio-simple.owl"/>
<terms:description xml:lang="en">The Genomic Epidemiology Ontology aims to provide a comprehensive controlled vocabulary for infectious disease surveillance and outbreak investigations. It is an application ontology that draws on many other ontologies including anatomy, taxonomy, disease, symptoms, environment and food types for foodborn pathogen metadata.</terms:description>
<terms:license rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
<terms:title xml:lang="en">Genomic Epidemiology Ontology</terms:title>
<oboInOwl:default-namespace>GENEPIO</oboInOwl:default-namespace>
<owl:versionInfo>2024-12-18</owl:versionInfo>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/GENEPIO_0000001 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/GENEPIO_0000001">
<rdfs:label xml:lang="en">metadata section</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/GENEPIO_0000004 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/GENEPIO_0000004">
<rdfs:label xml:lang="en">term as in existing standard</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/GENEPIO_0000005 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/GENEPIO_0000005">
<rdfs:label xml:lang="en">term source</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/GENEPIO_0000006 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/GENEPIO_0000006">
<obo:IAO_0000115 xml:lang="en">The user interface label is the label that should be placed on a datum when presented on a form or report</obo:IAO_0000115>
<obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
<rdfs:label xml:lang="en">user interface label</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/GENEPIO_0000162 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/GENEPIO_0000162">
<rdfs:label xml:lang="en">user interface definition</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/GENEPIO_0001745 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/GENEPIO_0001745">
<obo:IAO_0000115 xml:lang="en">A user interface help annotation is a textual phrase to display with an entity on a form or report that provides some detail about what the entity is or how it is being used.</obo:IAO_0000115>
<obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
<rdfs:label xml:lang="en">obsolete: user interface help</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/GENEPIO_0001746 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/GENEPIO_0001746">
<obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label xml:lang="en">obsolete: user interface hidden</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/GENEPIO_0001763 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/GENEPIO_0001763">
<obo:IAO_0000115 xml:lang="en">A user interface feature is a pre-set list of features and their acceptable values that a user interface rendering system should use to display an entity on a form or report</obo:IAO_0000115>
<obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
<rdfs:label xml:lang="en">user interface feature</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/GENEPIO_0001772 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/GENEPIO_0001772">
<obo:IAO_0000115 xml:lang="en">This annotation can be used to select the value specification that a referenced entity or specification component has for data entry. Can be scalar value specification / categorical tree specification etc.</obo:IAO_0000115>
<obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
<rdfs:label xml:lang="en">obsolete: user interface value specification</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/GENEPIO_0001920 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/GENEPIO_0001920">
<obo:GENEPIO_0000006 xml:lang="en">UI regex normalize</obo:GENEPIO_0000006>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
<obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
<rdfs:label xml:lang="en">user interface regular epression normalize</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/GENEPIO_1919 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/GENEPIO_1919">
<obo:GENEPIO_0000006 xml:lang="en">UI regex validate</obo:GENEPIO_0000006>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
<obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
<rdfs:label xml:lang="en">user interface regular expression validate</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/GENEPIO_1921 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/GENEPIO_1921">
<obo:GENEPIO_0000006 xml:lang="en">UI regex format</obo:GENEPIO_0000006>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
<obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
<rdfs:label xml:lang="en">user interface regular expression display format</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000111 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000111">
<obo:IAO_0000111 xml:lang="en">editor preferred label</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">editor preferred term</obo:IAO_0000111>
<obo:IAO_0000111>editor preferred label</obo:IAO_0000111>
<obo:IAO_0000111>editor preferred term</obo:IAO_0000111>
<obo:IAO_0000111>editor preferred term~editor preferred label</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:label xml:lang="en">editor preferred label</rdfs:label>
<rdfs:label xml:lang="en">editor preferred term</rdfs:label>
<rdfs:label>editor preferred label</rdfs:label>
<rdfs:label>editor preferred term</rdfs:label>
<rdfs:label>editor preferred term~editor preferred label</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112">
<obo:IAO_0000111 xml:lang="en">example of usage</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi&gt></obo:IAO_0000119>
<rdfs:label xml:lang="en">example of usage</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000114 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114">
<obo:IAO_0000111 xml:lang="en">has curation status</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Bill Bug</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000281</obo:IAO_0000119>
<rdfs:label xml:lang="en">has curation status</rdfs:label>
<rdfs:label>has curation status</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
<obo:IAO_0000111 xml:lang="en">definition</obo:IAO_0000111>
<obo:IAO_0000111>definition</obo:IAO_0000111>
<obo:IAO_0000111>textual definition</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
<obo:IAO_0000115>A property representing the English language definitions of what NCI means by the concept. They may also include information about the definition's source and attribution in a form that can easily be interpreted by software.</obo:IAO_0000115>
<obo:IAO_0000115>English language definitions of what NCI means by the concept. These are limited to 1024 characters. They may also include information about the definition's source and attribution in a form that can easily be interpreted by software.</obo:IAO_0000115>
<obo:IAO_0000115>The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
<obo:IAO_0000115>The official definition.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2012-04-05:
Barry Smith
The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.
Can you fix to something like:
A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.
Alan Ruttenberg
Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria.
On the specifics of the proposed definition:
We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition.
Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable.
We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. </obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<oboInOwl:hasExactSynonym>DEFINITION</oboInOwl:hasExactSynonym>
<rdfs:comment xml:lang="en">Allyson Lister 8.10.2019: Although the IAO definition has been included here, we have made a curation decision to allow non-Aristotelian definitions.</rdfs:comment>
<rdfs:label xml:lang="en">definition</rdfs:label>
<rdfs:label>definition</rdfs:label>
<rdfs:label>textual definition</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000116 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000116">
<obo:IAO_0000111 xml:lang="en">editor note</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000117>PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obofoundry.org/obo/obi&gt></obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obofoundry.org/obo/obi></obo:IAO_0000119>
<rdfs:label xml:lang="en">editor note</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117">
<obo:IAO_0000111 xml:lang="en">definition editor</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">term editor</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">Name of editor entering the definition in the file. The definition editor is a point of contact for information regarding the term. The definition editor may be, but is not always, the author of the definition, which may have been worked upon by several people</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">20110707, MC: label update to term editor and definition modified accordingly. See https://github.com/information-artifact-ontology/IAO/issues/115.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000117>PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi&gt></obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:label xml:lang="en">definition editor</rdfs:label>
<rdfs:label xml:lang="en">term editor</rdfs:label>
<rdfs:label>definition editor</rdfs:label>
<rdfs:label>term editor</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118">
<obo:IAO_0000111 xml:lang="en">alternative label</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">alternative term</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A label for a class or property that can be used to refer to the class or property instead of the preferred rdfs:label. Alternative labels should be used to indicate community- or context-specific labels, abbreviations, shorthand forms and the like.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000117>OBO Operations committee</obo:IAO_0000117>
<obo:IAO_0000117>PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000119>GROUP:OBI:<http://purl.obolibrary.org/obo/obi&gt></obo:IAO_0000119>
<rdfs:comment xml:lang="en">Consider re-defing to: An alternative name for a class or property which can mean the same thing as the preferred name (semantically equivalent, narrow, broad or related).</rdfs:comment>
<rdfs:comment>Consider re-defing to: An alternative name for a class or property which can mean the same thing as the preferred name (semantically equivalent, narrow, broad or related).</rdfs:comment>
<rdfs:label xml:lang="en">alternative label</rdfs:label>
<rdfs:label xml:lang="en">alternative term</rdfs:label>
<rdfs:label>alternative term</rdfs:label>
<rdfs:label>alternative_term</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119">
<obo:IAO_0000111 xml:lang="en">definition source</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000119>Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w</obo:IAO_0000119>
<rdfs:label xml:lang="en">definition source</rdfs:label>
<rdfs:label>definition source</rdfs:label>
<rdfs:label>definition_source</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000231 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000231">
<obo:IAO_0000111 xml:lang="en">has obsolescence reason</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<rdfs:label xml:lang="en">has obsolescence reason</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000232 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000232">
<obo:IAO_0000111 xml:lang="en">curator note</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">An administrative note of use for a curator but of no use for a user</obo:IAO_0000115>
<obo:IAO_0000117>PERSON:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">curator note</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000233 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000233">
<obo:IAO_0000111 xml:lang="en">term tracker item</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">An IRI or similar locator for a request or discussion of an ontology term.</obo:IAO_0000115>
<obo:IAO_0000117>Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg</obo:IAO_0000119>
<rdfs:comment xml:lang="en">The 'tracker item' can associate a tracker with a specific ontology term.</rdfs:comment>
<rdfs:label xml:lang="en">term tracker item</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000412 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
<rdfs:label xml:lang="en">imported from</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000596 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000596">
<obo:IAO_0000111 xml:lang="en">has ID digit count</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Relates an ontology used to record id policy to the number of digits in the URI. The URI is: the 'has ID prefix' annotation property value concatenated with an integer in the id range (left padded with '0's to make this many digits)</obo:IAO_0000115>
<obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">has ID digit count</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000597 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000597">
<obo:IAO_0000111 xml:lang="en">has ID range allocated</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Relates a datatype that encodes a range of integers to the name of the person or organization who can use those ids constructed in that range to define new terms</obo:IAO_0000115>
<obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">has ID range allocated</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000598 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000598">
<obo:IAO_0000111 xml:lang="en">has ID policy for</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Relating an ontology used to record id policy to the ontology namespace whose policy it manages</obo:IAO_0000115>
<obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">has ID policy for</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000600 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000600"/>
<!-- http://purl.obolibrary.org/obo/IAO_0100001 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001">
<obo:IAO_0000111 xml:lang="en">term replaced by</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">Add as annotation triples in the granting ontology</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">Use on obsolete terms, relating the term to another term that can be used as a substitute</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000119>
<rdfs:label xml:lang="en">term replaced by</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0001886 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0001886">
<obo:IAO_0000111 xml:lang="en">NIAID GSCID-BRC alternative term</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">An alternative term used by the National Institute of Allergy and Infectious Diseases (NIAID) Genomic Sequencing Centers for Infectious Diseases (GSCID) and Bioinformatics Resource Centers (BRC).</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chris Stoeckert, Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">NIAID GSCID-BRC metadata working group</obo:IAO_0000119>
<obo:IAO_0000119>NIAID GSCID-BRC metadata working group</obo:IAO_0000119>
<rdfs:label xml:lang="en">NIAID GSCID-BRC alternative term</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000118"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0001900 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001900">
<obo:IAO_0000111 xml:lang="en">temporal interpretation</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.</obo:IAO_0000115>
<obo:IAO_0000115>An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.</obo:IAO_0000115>
<rdfs:label xml:lang="en">temporal interpretation</rdfs:label>
<rdfs:label>temporal interpretation</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"/>
<rdfs:seeAlso>http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/</rdfs:seeAlso>
<rdfs:seeAlso>https://oborel.github.io/obo-relations/temporal-semantics/</rdfs:seeAlso>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002259 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002259">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002575 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002575">
<obo:IAO_0000115 xml:lang="en">relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y</obo:IAO_0000115>
<obo:IAO_0000115>relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y</obo:IAO_0000115>
<obo:IAO_0000116>The general property hierarchy is:
"directly P" SubPropertyOf "P"
Transitive(P)
Where we have an annotation assertion
"directly P" "is direct form of" "P"</obo:IAO_0000116>
<rdfs:label xml:lang="en">is direct form of</rdfs:label>
<rdfs:label>is direct form of</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/direct-and-indirect-relations/"/>
<rdfs:seeAlso xml:lang="en">http://purl.obolibrary.org/obo/ro/docs/direct-and-indirect-relations/</rdfs:seeAlso>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/namespace -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/namespace">
<rdfs:label xml:lang="en">namespace</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/valid_for_go_annotation_extension">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/valid_for_go_gp2term -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/valid_for_go_gp2term">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/valid_for_go_ontology -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/valid_for_go_ontology">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/valid_for_gocam -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/valid_for_gocam">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/genepio/core_slim.owl -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/genepio/core_slim.owl">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/ro/subsets#ro-eco -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/ro/subsets#ro-eco">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/contributor -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/contributor">
<rdfs:label xml:lang="en">contributor</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/creator -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/creator">
<rdfs:label xml:lang="en">creator</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/terms/contributor -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/contributor"/>
<!-- http://purl.org/dc/terms/date -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/date"/>
<!-- http://purl.org/dc/terms/description -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/description"/>
<!-- http://purl.org/dc/terms/license -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>
<!-- http://purl.org/dc/terms/source -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/source"/>
<!-- http://purl.org/dc/terms/title -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/title"/>
<!-- http://www.geneontology.org/formats/oboInOwl#SubsetProperty -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
<!-- http://www.geneontology.org/formats/oboInOwl#created_by -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#created_by">
<rdfs:label xml:lang="en">created_by</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#creation_date -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#creation_date">
<rdfs:label xml:lang="en">creation_date</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#default-namespace -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#default-namespace"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasAlternativeId -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasAlternativeId">
<rdfs:label>has_alternative_id</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym">
<obo:IAO_0000115 xml:lang="en">An alternative label for a class or property which has a more general meaning than the preferred name/primary label.</obo:IAO_0000115>
<obo:IAO_0000115>An alternative label for a class or property which has a more general meaning than the preferred name/primary label.</obo:IAO_0000115>
<obo:IAO_0000117>http://orcid.org/0000-0001-5208-3432</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/information-artifact-ontology/ontology-metadata/issues/18</obo:IAO_0000233>
<rdfs:label xml:lang="en">has broad synonym</rdfs:label>
<rdfs:label>has_broad_synonym</rdfs:label>
<rdfs:seeAlso>https://github.com/information-artifact-ontology/ontology-metadata/issues/18</rdfs:seeAlso>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000118"/>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref">
<obo:IAO_0000115>An annotation property that links an ontology entity or a statement to a prefixed identifier or URI.</obo:IAO_0000115>
<obo:IAO_0000115>Reference database or publication source.</obo:IAO_0000115>
<rdfs:label xml:lang="en">has database cross reference</rdfs:label>
<rdfs:label xml:lang="en">hasDbXref</rdfs:label>
<rdfs:label>database_cross_reference</rdfs:label>
<rdfs:label>has cross-reference</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym">
<obo:IAO_0000115 xml:lang="en">An alternative label for a class or property which has the exact same meaning than the preferred name/primary label.</obo:IAO_0000115>
<obo:IAO_0000115>A property representing a fully qualified synonym, contains the string, term type, source, and an optional source code if appropriate. Each subfield is deliniated to facilitate interpretation by software.</obo:IAO_0000115>
<obo:IAO_0000115>An alternative label for a class or property which has the exact same meaning than the preferred name/primary label.</obo:IAO_0000115>
<obo:IAO_0000115>An alternative label for a given entity such as a commonly used abbreviation or synonym. </obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="http://orcid.org/0000-0001-5208-3432"/>
<obo:IAO_0000117>http://orcid.org/0000-0001-5208-3432</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/information-artifact-ontology/ontology-metadata/issues/20</obo:IAO_0000233>
<oboInOwl:hasExactSynonym>FULL_SYN</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>Synonym with Source Data</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">has exact synonym</rdfs:label>
<rdfs:label>has exact synonym</rdfs:label>
<rdfs:label>has_exact_synonym</rdfs:label>
<rdfs:seeAlso>https://github.com/information-artifact-ontology/ontology-metadata/issues/20</rdfs:seeAlso>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000118"/>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym">
<obo:IAO_0000115 xml:lang="en">An alternative label for a class or property which has a more specific meaning than the preferred name/primary label.</obo:IAO_0000115>
<obo:IAO_0000115>An alternative label for a class or property which has a more specific meaning than the preferred name/primary label.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="http://orcid.org/0000-0001-5208-3432"/>
<obo:IAO_0000117>http://orcid.org/0000-0001-5208-3432</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/information-artifact-ontology/ontology-metadata/issues/19</obo:IAO_0000233>
<rdfs:label xml:lang="en">has narrow synonym</rdfs:label>
<rdfs:label>has_narrow_synonym</rdfs:label>
<rdfs:seeAlso>https://github.com/information-artifact-ontology/ontology-metadata/issues/19</rdfs:seeAlso>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000118"/>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym">
<obo:IAO_0000115 xml:lang="en">An alternative label for a class or property that has been used synonymously with the primary term name, but the usage is not strictly correct.</obo:IAO_0000115>
<obo:IAO_0000117>http://orcid.org/0000-0001-5208-3432</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/information-artifact-ontology/ontology-metadata/issues/21</obo:IAO_0000233>
<rdfs:label xml:lang="en">has related synonym</rdfs:label>
<rdfs:seeAlso>https://github.com/information-artifact-ontology/ontology-metadata/issues/21</rdfs:seeAlso>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000118"/>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasSynonym">
<rdfs:label xml:lang="en">has synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#inSubset -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset">
<obo:IAO_0000115>In subset.</obo:IAO_0000115>
<rdfs:label>in_subset</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2000/01/rdf-schema#comment -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#comment">
<obo:IAO_0000115>Comment.</obo:IAO_0000115>
<rdfs:label xml:lang="en">comment</rdfs:label>
<rdfs:label>comment</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2000/01/rdf-schema#isDefinedBy -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#isDefinedBy">
<rdfs:label xml:lang="en">is defined by</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2000/01/rdf-schema#label -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#label">
<obo:IAO_0000111 xml:lang="en">label</obo:IAO_0000111>
<obo:IAO_0000111>label</obo:IAO_0000111>
<obo:IAO_0000115>A human readable name for this class.</obo:IAO_0000115>
<rdfs:comment xml:lang="en">A human-readable name for the subject.</rdfs:comment>
<rdfs:label xml:lang="en">label</rdfs:label>
<rdfs:label>label</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2000/01/rdf-schema#seeAlso -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#seeAlso">
<rdfs:label xml:lang="en">see also</rdfs:label>
<rdfs:label>see also</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2002/07/owl#backwardCompatibleWith -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2002/07/owl#backwardCompatibleWith">
<rdfs:label xml:lang="en">backward compatible with</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2002/07/owl#deprecated -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2002/07/owl#deprecated">
<rdfs:label xml:lang="en">deprecated</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2002/07/owl#incompatibleWith -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2002/07/owl#incompatibleWith">
<rdfs:label xml:lang="en">incompatible with</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2002/07/owl#priorVersion -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2002/07/owl#priorVersion">
<rdfs:label xml:lang="en">prior version</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2002/07/owl#versionInfo -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2002/07/owl#versionInfo">
<rdfs:label xml:lang="en">versionInfo</rdfs:label>
</owl:AnnotationProperty>
<!-- http://xmlns.com/foaf/0.1/mbox -->
<owl:AnnotationProperty rdf:about="http://xmlns.com/foaf/0.1/mbox"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Datatypes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://www.w3.org/2001/XMLSchema#date -->
<rdfs:Datatype rdf:about="http://www.w3.org/2001/XMLSchema#date"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050">
<rdfs:label xml:lang="en">part of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000111 xml:lang="en">has part</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">a core relation that holds between a whole and its part</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)
A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">has_part</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:comment xml:lang="en">Damion comments: In GenEpiO, If an entity has more than one value specification (in a conjunction), then it means the entitiy is a complex entity that can have a value for each specification. Minimum data requirements can be spelled out using some, min 1, max 10 etc. restrictions.</rdfs:comment>
<rdfs:label xml:lang="en">has part</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000054 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000054">
<rdfs:label xml:lang="en">realized in</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000062 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000062"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000063 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000063"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000067 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000067">
<obo:IAO_0000111 xml:lang="en">site of</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:comment>Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant</rdfs:comment>
<rdfs:label xml:lang="en">contains process</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/GENEPIO_0001340 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/GENEPIO_0001340">
<rdfs:label xml:lang="en">obsolete has string specification of</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/GENEPIO_0001739 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/GENEPIO_0001739">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002083"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
<obo:IAO_0000115 xml:lang="en">T1 after t2 iff:= t2 before_or_simulataneous_with t1 and not (t1 simultaeous_with t2)</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Damion Dooley</obo:IAO_0000117>
<rdfs:comment xml:lang="en">Damion Dooley's note: Intention is to have it be the inverse of "before". This allows axioms like "B after A" to be placed in class B, rather than having to phrase them as "A before B" in class A.
I believe time dependency relations (conditions) don't imply existence by themselves. If B after A, and B exists, this doesn't necessarily mean that A exists, only that if A does exist, it must be before B. To add that extra existence implication probably requires the "causally downstream of" and "immediately causally downstream of" RO relations, in a closed system where B cannot exist any other way.</rdfs:comment>
<rdfs:label xml:lang="en">after</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/GENEPIO_0002469 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/GENEPIO_0002469">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001938"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/GENEPIO_0002468"/>
<rdfs:label xml:lang="en">obsolete: has string value specification</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/GENEPIO_0002470 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/GENEPIO_0002470">
<rdfs:label xml:lang="en">obsolete: has categorical specification of</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/GENEPIO_0002471 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/GENEPIO_0002471">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001938"/>
<rdfs:label xml:lang="en">obsolete: has categorical value specification</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000039 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000039">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<obo:GENEPIO_0000006 xml:lang="en">has unit</obo:GENEPIO_0000006>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">has measurement unit label</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000136 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000136">
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A (currently) primitive relation that relates an information artifact to an entity.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of "mentions" relation. Weaken the is_about relationship to be primitive.
We will try to build it back up by elaborating the various subproperties that are more precisely defined.
Some currently missing phenomena that should be considered "about" are predications - "The only person who knows the answer is sitting beside me" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Smith, Ceusters, Ruttenberg, 2000 years of philosophy</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">is about</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000219 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000219">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<obo:IAO_0000115 xml:lang="en">A primitive, instance-level, relation obtaining between an information content entity and some portion of reality. Denotation is what happens when someone creates an information content entity E in order to specifically refer to something. The only relation between E and the thing is that E can be used to 'pick out' the thing. This relation connects those two together. Freedictionary.com sense 3: To signify directly; refer to specifically</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009-11-10 Alan Ruttenberg. Old definition said the following to emphasize the generic nature of this relation. We no longer have 'specifically denotes', which would have been primitive, so make this relation primitive.
g denotes r =def
r is a portion of reality
there is some c that is a concretization of g
every c that is a concretization of g specifically denotes r</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Conversations with Barry Smith, Werner Ceusters, Bjoern Peters, Michel Dumontier, Melanie Courtot, James Malone, Bill Hogan</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:comment xml:lang="en"></rdfs:comment>
<rdfs:label xml:lang="en">denotes</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0001927 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0001927">