Longitudinal Dataset

[Olawumi2021]

Hi authors,

I am trying to recreate the temporal dataset you used in your paper. I noticed in your preprocessing folder under the 'create_temporal_dataset.ipynb', that you used 'master.csv' file, please can you explain how this file was generated.

Also, in the datasets folder, you have another file 'temporal_mimic_cxr_dataset.py' where you used 'mimic_annotation.json' file.

Can you explain which of the longitudinal data you used, the one from the preprocessing folder or the one from the datasets folder? How was the 'master.csv' file and 'mimic_annotation.json' file created?

dataset = TemporalMIMICCXRDataset(
annotation_file="/home/r15user2/Documents/CXR_dataset/temporal_CXR/mimic_annotation.json",
dataset_dir="/home/r15user2/Documents/CXR_dataset/mimic_data/2.0.0/files",
split="train",
train_data_pct=1,
tokenizer=tokenizer
)

[fuying-wang]

Hi,

Thanks for your intererst in our work. We are refactoring our codebase and will release the preprocessing code to curate this longitudinal dataset as soon as possible.

Thanks a lot!

[okdanko0520]

你好，

感谢您对我们工作的关注。我们正在重构代码库，并将尽快发布预处理代码来整理这个纵向数据集。

多谢！

Hello!
Thank you for your work. May I ask when you plan to release your preprocessing code and longitudinal dataset?
Thank you!

[okdanko0520]

嗨，作者们，

我正在尝试重新创建您在论文中使用的时间数据集。我注意到在“create_temporal_dataset.ipynb”下的预处理文件夹中，您使用了**“master.csv”**文件，请您解释一下这个文件是如何生成的。

此外，在数据集文件夹中，您有另一个文件“temporal_mimic_cxr_dataset.py”，其中使用了“ mimic_annotation.json ”文件。

您能解释一下您使用的是哪个纵向数据吗？是来自预处理文件夹的数据，还是来自数据集文件夹的数据？**“master.csv”文件和“mimic_annotation.json”**文件是如何创建的？

数据集 = TemporalMIMICCXRDataset（ annotation_file="/home/r15user2/Documents/CXR_dataset/temporal_CXR/mimic_annotation.json"， dataset_dir="/home/r15user2/Documents/CXR_dataset/mimic_data/2.0.0/files"， split="train"， train_data_pct=1， tokenizer=tokenizer ）

Hello, may I ask if you have resolved this issue?

[okdanko0520]

Waiting for your update！...(｡•ˇ‸ˇ•｡) ......(｡•ˇ‸ˇ•｡) ......(｡•ˇ‸ˇ•｡) ...

[fuying-wang]

Waiting for your update！...(｡•ˇ‸ˇ•｡) ......(｡•ˇ‸ˇ•｡) ......(｡•ˇ‸ˇ•｡) ...

Hi,

Sorry for the late update ... We have updated the README and the preprocessing code. Please let us know if you have any questions.

Best regards,
Fuying