Skip to content
@HUBioDataLab

Hacettepe University Biological Data Science Laboratory

An academic research laboratory focusing on machine/deep learning applications in the fields of bioinformatics and cheminformatics

Popular repositories Loading

  1. SELFormer SELFormer Public

    SELFormer: Molecular Representation Learning via SELFIES Language Models

    Python 90 17

  2. DrugGEN DrugGEN Public

    Official implementation of DrugGEN: Target Specific De Novo Design of Drug Candidate Molecules with Graph Transformer-based Generative Adversarial Networks

    Python 62 17

  3. ProtBENCH ProtBENCH Public

    Forked from hevalatas/ProtBENCH

    Python 11 2

  4. CROssBARv2 CROssBARv2 Public

    This is a repo for migration of CROssBAR data to the Neo4j database via BioCypher

    Python 9 8

  5. ProtHGT ProtHGT Public

    A Heterogeneous Graph Transformer (HGT)-based model for protein function prediction using biological knowledge graphs and protein language models

    Python 9

  6. DrugApp DrugApp Public

    Forked from fulyaciray/DrugApp

    Python 8

Repositories

Showing 10 of 28 repositories
  • CROssBAR_LLM Public
    HUBioDataLab/CROssBAR_LLM’s past year of commit activity
    JavaScript 3 0 0 0 Updated Apr 30, 2025
  • crossbar-website Public
    HUBioDataLab/crossbar-website’s past year of commit activity
    JavaScript 0 0 0 0 Updated Apr 26, 2025
  • ProtHGT Public

    A Heterogeneous Graph Transformer (HGT)-based model for protein function prediction using biological knowledge graphs and protein language models

    HUBioDataLab/ProtHGT’s past year of commit activity
    Python 9 GPL-3.0 0 0 0 Updated Apr 25, 2025
  • FlowProt Public
    HUBioDataLab/FlowProt’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 23, 2025
  • TransPRSFP Public Forked from ProteinFunctionPrediction/Sequence-Region-Specific-Prediction-of-Protein-Functions
    HUBioDataLab/TransPRSFP’s past year of commit activity
    Python 0 GPL-3.0 2 0 0 Updated Apr 21, 2025
  • PROQUEST Public Forked from melike-akkaya/PROQUEST

    ProQuest: Protein Querying Using Semantic Technology for developing the UniProtKB LLM Query Interface

    HUBioDataLab/PROQUEST’s past year of commit activity
    Python 1 1 0 0 Updated Apr 21, 2025
  • CROssBARv2 Public

    This is a repo for migration of CROssBAR data to the Neo4j database via BioCypher

    HUBioDataLab/CROssBARv2’s past year of commit activity
    Python 9 8 2 0 Updated Apr 15, 2025
  • DrugGEN Public

    Official implementation of DrugGEN: Target Specific De Novo Design of Drug Candidate Molecules with Graph Transformer-based Generative Adversarial Networks

    HUBioDataLab/DrugGEN’s past year of commit activity
    Python 62 GPL-3.0 17 4 0 Updated Mar 29, 2025
  • Prot2Mol Public

    Target based molecule generation using protein embeddings and SELFIES molecule representation

    HUBioDataLab/Prot2Mol’s past year of commit activity
    Python 1 GPL-3.0 2 0 1 Updated Mar 24, 2025
  • DEEPScreen2 Public

    Automated Tool for Drug-Target Interaction Prediction Using Deep Convolutional Neural Networks

    HUBioDataLab/DEEPScreen2’s past year of commit activity
    Python 1 GPL-3.0 4 0 0 Updated Mar 17, 2025
View all repositories

Top languages

Loading…

Most used topics

Loading…