Add MS run acquisition start and end times (#94)

* Add time points

* Re-numbered terms

* add has_structured_representation_in_format. correct?

* Add has_structured_representation_in_format typedef

* Use CURIE for has_structured_representation_in_format value

* Add list of attributes to check for terms

Co-authored-by: Eric Deutsch <edeutsch@users.noreply.github.com>

psi-ms.obo

@@ -1,7 +1,7 @@
 format-version: 1.2
-data-version: 4.1.67
+data-version: 4.1.68
 date: 04:12:2021 00:00
-saved-by: Matt Chambers
+saved-by: Joshua Klein
 auto-generated-by: OBO-Edit 2.3.1
 import: http://purl.obolibrary.org/obo/pato.obo
 import: http://purl.obolibrary.org/obo/uo.obo
@@ -54,6 +54,11 @@ id: has_value_type
 name: has value type
 def: "'Entity A' has value type 'Entity B', such as xsd:float." []
 
+[Typedef]
+id: has_structured_representation_in_format
+name: has structured representation in format
+def: "The term is encoded in the structure of the named file format rather than as an explicit parameter, and should not be used as one in that format." []
+
 [Term]
 id: MS:0000000
 name: Proteomics Standards Initiative Mass Spectrometry Vocabularies
@@ -22165,6 +22170,21 @@ is_a: MS:1001456 ! analysis software
 is_a: MS:1003207 ! library creation software
 is_a: MS:1002878 ! small molecule analysis software
 
+[Term]
+id: MS:1003233
+name: instrument acquisition start time
+def: "The date and time of the instrument data acquisition start timepoint" [PSI:MS]
+is_a: MS:1000857 ! run attribute
+relationship: has_value_type xsd\:dateTime
+relationship: has_structured_representation_in_format MS:1000584 ! mzML format
+
+[Term]
+id: MS:1003234
+name: instrument acquisition end time
+def: "The date and time of the instrument data acquisition end timepoint" [PSI:MS]
+is_a: MS:1000857 ! run attribute
+relationship: has_value_type xsd\:dateTime
+
 [Term]
 id: PEFF:0000001
 name: PEFF CV term