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Add NCIT terms for mzQC (#109)
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* Add NCIT terms for mzQC

As per #105, remove the full NCIT import and just re-declare the 4 NCIT terms that are used in mzQC.

I've used abridged terms from NCIT now that contain the relevant information, without some of the unnecessary `property_value` specifications. I'm not sure though whether the `is_a` specifications might be problematic now, because they refer to NCIT parent terms that are not included in our CV? It shouldn't be our goal to redefine the NCIT tree up to those terms, so if this is indeed problematic, what would be the solution? Have the terms consist of just `id`-`name`-`def`?

* Update OBO version
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bittremieux authored Mar 24, 2022
1 parent 9ea622a commit f2e9f22
Showing 1 changed file with 27 additions and 4 deletions.
31 changes: 27 additions & 4 deletions psi-ms.obo
Original file line number Diff line number Diff line change
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format-version: 1.2
data-version: 4.1.73
date: 11:03:2022 02:22
saved-by: Eric Deutsch
data-version: 4.1.74
date: 16:03:2022 10:37
saved-by: Wout Bittremieux
auto-generated-by: OBO-Edit 2.3.1
import: http://purl.obolibrary.org/obo/pato.obo
import: http://purl.obolibrary.org/obo/uo.obo
import: http://purl.obolibrary.org/obo/stato.owl
import: http://purl.obolibrary.org/obo/ncit.owl
default-namespace: MS
namespace-id-rule: * MS:$sequence(7,0,9999999)$
namespace-id-rule: * PEFF:$sequence(7,0,9999999)$
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id: has_optional_column
name: has_optional_column

[Term]
id: NCIT:C25330
name: Duration
def: "The period of time during which something continues." [] {http://purl.obolibrary.org/obo/NCIT_P378="NCI"}
is_a: NCIT:C21514 ! Temporal Qualifier

[Term]
id: NCIT:C45781
name: Density
def: "The amount of something per unit size." [] {http://purl.obolibrary.org/obo/NCIT_P378="NCI"}
is_a: NCIT:C25447 ! Characteristic

[Term]
id: NCIT:C68811
name: Cover
def: "Span a region or interval of distance, space or time." [] {http://purl.obolibrary.org/obo/NCIT_P378="NCI"}
is_a: NCIT:C25404 ! Action

[Term]
id: NCIT:C79083
name: Outlier
def: "An observation in a data set that is numerically distant from the rest of the data." [] {http://purl.obolibrary.org/obo/NCIT_P378="NCI"}
is_a: NCIT:C20181 ! Conceptual Entity

[Term]
id: MS:0000000
name: Proteomics Standards Initiative Mass Spectrometry Vocabularies
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