Added SOFA

Author: wolfganghuber

index.tex

@@ -27,13 +27,14 @@
 
 %2025 sorted by date
 \nocite{%
-Meyer-Bender:bioRxiv:2025,
 AhlmannEltze:NatGen:2025,
+Meyer-Bender:bioRxiv:2025,
+AhlmannEltze:NatMeth:2025,
 Rodov:EJI:2025}
 
 %2024 sorted by date
 \nocite{%
-AhlmannEltze:biorxiv:2024,
+Capraz:bioRxiv:2024,
 Redhai:bioRxiv:2024a,
 Redhai:bioRxiv:2024b,
 Lindenhofer:bioRxiv:2024,

lop.bib

@@ -1,6 +1,17 @@
 %------------------------------------------------------------
 % preprints, under review, everything not yet published
 %------------------------------------------------------------
+@article{Capraz:bioRxiv:2024,
+  title={Semi-supervised Omics Factor Analysis ({SOFA}) disentangles known and latent sources of variation in multi-omic data},
+  author={Tümay Capraz and Harald Vöhringer and Klaus Sebastian Augusto Kruger Serrano and Ricardo Omar Ramirez Flores and Julio Saez-Rodriguez and Wolfgang Huber},
+  journal={{bioR$\chi$iv}},
+  year={2024},
+  month={October},
+  EPMC={https://europepmc.org/article/PPR/PPR924103},
+  DOI={10.1101/2024.10.10.617527},
+  preprint={10.1101/2024.10.10.617527},
+}
+
 @article{Meyer-Bender:bioRxiv:2025,
   title={Spatialproteomics - an interoperable toolbox for analyzing highly multiplexed fluorescence image data},
   author={Matthias Meyer-Bender and Harald Vöhringer and Christina Schniederjohann and Sarah Koziel and Erin Chung and Ekaterina Popova and Alexander Brobeil and Lisa-Maria Held and Aamir Munir and Scverse Community and Sascha Dietrich and Peter-Martin Bruch\cocorr and Wolfgang Huber\cocorr},
@@ -13,10 +24,10 @@ @article{Meyer-Bender:bioRxiv:2025
   preprint={10.1101/2025.04.29.651202},
 }
 
-@article{AhlmannEltze:biorxiv:2024,
+@article{AhlmannEltze:NatMeth:2025,
   title = {Deep learning-based predictions of gene perturbation effects do not yet outperform simple linear methods},
   author = {Constantin Ahlmann-Eltze and Wolfgang Huber and Simon Anders},
-  journal = {{bioR$\chi$iv}},
+  journal = {Nature Methods (in production)},
   year = {2024},
   month = {September},
   EPMC = {https://europepmc.org/article/PPR/PPR913188},