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T162 heterogenous sos#176

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Commits on Jul 22, 2022

• Fixed syntax in type hints of the function arguments

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• added Tag which defines whether to consider heterogenous sos

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• 1st version of heterogenous sos delay calculation

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• corrected type hints in arguments, add arguments

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Commits on Aug 4, 2022

• improved accuray to ~10^(-13) (compared with homogenous calculation and homogen.sos-map) by not adding unneccassary device base position and by fixing dtype error of delays container

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Commits on Aug 5, 2022

• fixed interpolation by transposing sos-map

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• new test for heterogenous reconsruction based on MinimalKWaveTest.py

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Commits on Aug 8, 2022

• moved and renamed; added gaussian noise and 2 regions sos-maps

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Commits on Aug 9, 2022

• renamed manual test for testing hDAS recon using toy sos-maps

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• write new test for hDAS using tissue based sos and simulated p0

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• update type hints, comments; differentiate between float/array handling of speed_of_sound

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• removed unnecessary comments/prints, replaced prints by logger prints

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Commits on Aug 16, 2022

• last version using grid_sample function (integral offset by 1 with respect to analytical solution for horizontal gradient)

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• added bilinear interpolation function of imgs/maps

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Commits on Sep 9, 2022

• debugged for pixels outside the to interpolated map to take the nearest neighbour values and not to linearly interpolate

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• manual test for testing hDAS using 3 point like vessels

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• memory optimized version for 2d interpolation, but can be made nicer

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• renamed the file again and fixed some typos

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• added new function with own interpolation, changed errors due to offset bugs in the interpolation, temporary added memory debug prints in order to change function with own interpolation to reduce m…

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Commits on Sep 13, 2022

• optimized 2d interpolation in terms of gpu memory usage, added print_memory_stats function for printing used memory

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• automated test for testing 2d interpolation function

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• fixed typo (one blank space too much)

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• debugged 3d interpolation and wrote test for 2d and 3d interpolation

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• tried some memory reducing methods

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• optimized memory usage in interpolation

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• for 400x400 fov fixed memory issue

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• delete comment with old memory expensive 2d interpolation

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Commits on Sep 14, 2022

• renamed file and added one vessel

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• restructured a few lines

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• converted jupyter-notebook into python file

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Commits on Sep 15, 2022

• convert notebook to automatic test: compares numerically integrated delays with analytically integrated delays

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• added some boolean as input parameters for debugging and verboseness,

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• decrease computation time down to 70%

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Commits on Sep 16, 2022

• outsourced toms homogen delay calculation,

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• applied memory reducing steps also to 3dim case and tested it against scipy interpolation

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• added verbosity handling and also changed input parameters to be in the PAI-realistic units

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• renamed class name

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Commits on Sep 19, 2022

• delete optionality parameters:

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• deleted all optional parameters (also mixed_coordinate_system)

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• added comments and type hints

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• also works for cpu now

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Commits on Sep 26, 2022

• deleted function w/ own interpolation due to computation time

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• added parameter for random sensor

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Commits on Sep 27, 2022

• commented and added new plot

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• save path changes

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• delete unneccessary import

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Commits on Dec 14, 2022

• Merge branch 'develop' into T162_HeterogenousSOS

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• added logger as parameter to calculate_delays_for_homogen_sos

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Commits on Dec 16, 2022

• debugged assert error (correct position boundaries of sensor sampling)

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• corrected heterogeneous spelling

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