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@ImagingDataCommons

Imaging Data Commons

Welcome to the official GitHub organization for the Imaging Data Commons!

About IDC

The National Cancer Institute Imaging Data Commons (IDC) is a cloud-based repository of publicly available cancer imaging data, co-located with analysis and exploration tools. As part of the NCI Cancer Research Data Commons (CRDC), IDC provides researchers with:

  • Access to >85 TB of cancer imaging data, including radiology, brightfield, and fluorescence microscopy images
  • Image-derived data such as annotations, segmentations, and quantitative measurements
  • Accompanying clinical data
  • Cloud-based infrastructure for data exploration and analysis

Key Features

  • Free and open access: No registration or access requests required
  • Commercial-friendly licensing: >95% of data covered by CC-BY license
  • Cloud-based: Data available from both Google and AWS public buckets
  • Standardized data: All images and derived data harmonized into DICOM format

Repositories

Our GitHub organization hosts various repositories to support IDC users:

  • IDC-Tutorials: Self-guided notebook tutorials to help you get started with IDC
  • idc-index: python package for searching, downloading, and simplifying access to the data in IDC
  • SlicerIDCBrowser: 3D Slicer extension providing access to IDC data
  • idc-wsi-conversion: PixelMed Toolkit based scripts used in IDC for converting vendor-specific slide microscopy formats into DICOM WSI representation

We are also maintianing a number of repositories containing popular tools that we use in IDC, but which are of general utility:

Getting Started

To begin using IDC:

Support

If you need assistance or have questions, please:

  • Open a new topic in the IDC User Forum (preferred)
  • Send us a message at support at canceridc dot dev

We're excited to support your cancer imaging research with IDC!

Pinned Loading

  1. IDC-Tutorials IDC-Tutorials Public

    Self-guided notebook tutorials to help get started with using IDC

    Jupyter Notebook 30 17

  2. idc-index idc-index Public

    Python package to simplify access to the data available from NCI Imaging Data Commons

    Python 12 6

  3. highdicom highdicom Public

    High-level DICOM abstractions for the Python programming language

    Python 191 39

  4. dicomweb-client dicomweb-client Public

    Python client for DICOMweb RESTful services

    Python 116 38

  5. slim slim Public

    Interoperable web-based DICOM slide microscopy viewer and annotation tool

    TypeScript 129 39

  6. SlicerIDCBrowser SlicerIDCBrowser Public

    A 3D Slicer extension to support access to the content of NCI Imaging Data Commons

    Python 5 5

Repositories

Showing 10 of 60 repositories
  • highdicom Public

    High-level DICOM abstractions for the Python programming language

    ImagingDataCommons/highdicom’s past year of commit activity
    Python 191 MIT 39 26 (1 issue needs help) 4 Updated Feb 24, 2025
  • IDC-Docs Public

    Source for IDC documentation

    ImagingDataCommons/IDC-Docs’s past year of commit activity
    5 BSD-3-Clause 2 7 1 Updated Feb 24, 2025
  • IDC-WebApp Public Forked from isb-cgc/ISB-CGC-Webapp

    Web Application front end for IDC (CORE REPO)

    ImagingDataCommons/IDC-WebApp’s past year of commit activity
    JavaScript 6 Apache-2.0 9 124 0 Updated Feb 24, 2025
  • CloudSegmentator Public

    Medical imaging segmentation workflows for FireCloud (Terra) and Seven Bridges Cancer Genomics Cloud

    ImagingDataCommons/CloudSegmentator’s past year of commit activity
    Jupyter Notebook 4 Apache-2.0 3 4 0 Updated Feb 23, 2025
  • idc-index Public

    Python package to simplify access to the data available from NCI Imaging Data Commons

    ImagingDataCommons/idc-index’s past year of commit activity
    Python 12 MIT 6 19 0 Updated Feb 22, 2025
  • idc-index-data Public

    Python package providing the index to query and download data hosted by the NCI Imaging Data Commons

    ImagingDataCommons/idc-index-data’s past year of commit activity
    Python 1 MIT 4 2 0 Updated Feb 21, 2025
  • idc-wsi-conversion Public

    (CORE REPO)

    ImagingDataCommons/idc-wsi-conversion’s past year of commit activity
    Shell 12 0 1 0 Updated Feb 21, 2025
  • slim Public

    Interoperable web-based DICOM slide microscopy viewer and annotation tool

    ImagingDataCommons/slim’s past year of commit activity
    TypeScript 129 Apache-2.0 39 69 (1 issue needs help) 7 Updated Feb 21, 2025
  • dicom-microscopy-viewer Public

    Web-based DICOM slide microscopy viewer library

    ImagingDataCommons/dicom-microscopy-viewer’s past year of commit activity
    JavaScript 105 MIT 38 9 5 Updated Feb 21, 2025
  • ImagingDataCommons/idc-sm-annotations-conversion’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Feb 20, 2025