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Models hub internal (#1793)
* 2024-07-03-ner_menopause_core_en (#1304)
* 2024-07-02-city_matcher_en (#1296)
* 2024-07-03-re_oncology_biomarker_result_en (#1302)
* 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en (#1301)
* Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en
* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md
* Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en
* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md
* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md
* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md
* Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en
* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md
* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md
* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md
* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md
* Delete docs/_posts/akrztrk/2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md
* Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en
* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md
* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md
* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md
* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md
* Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en
* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en.md
* Add model 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en
* Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md
* Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md
* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md
* Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md
* Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en
* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en.md
* Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md
* Add model 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en
* Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md
* Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md
* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md
* Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md
* Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en
* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en.md
* Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md
* Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md
* Add model 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en
* Update 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en.md
* Add model 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en
* Update 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en.md
* Add model 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en
* Update 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-06-26-contextual_assertion_someone_else_en (#1298)
* Add model 2024-06-26-contextual_assertion_someone_else_en
* Add model 2024-07-03-contextual_assertion_absent_en
* Add model 2024-07-04-contextual_assertion_past_en
* updated model table.
* updated model table-2
* updated example text
---------
Co-authored-by: yigitgull <yigit1gul@gmail.com>
Co-authored-by: yigitgull <110747690+yigitgull@users.noreply.github.com>
* 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1327)
* Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en
* Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md
* Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md
* Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1328)
* Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en
* Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-07-22-ner_profiling_clinical_en (#1335)
* 2024-07-22-ner_profiling_clinical_en (#1337)
* 2024-07-22-ner_profiling_clinical_en (#1336)
* Add model 2024-07-27-mpnetresolve_icd10_cms_hcc_2024_midyear_en (#1343)
* 2024-07-25-mpnet_embeddings_medical_assertion_en (#1341)
* 2024-08-02-bert_sequence_classifier_metastasis_en (#1356)
* Add model 2024-08-02-bert_sequence_classifier_metastasis_en
* Update 2024-08-02-bert_sequence_classifier_metastasis_en.md
* Update 2024-08-02-bert_sequence_classifier_metastasis_en.md
* Update 2024-08-02-bert_sequence_classifier_metastasis_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-08-09-classifierdl_metastasis_en (#1371)
* Update 2024-08-09-generic_svm_classifier_metastasis_en.md
* Update 2024-08-09-generic_svm_classifier_metastasis_en.md
* Update 2024-08-09-generic_logreg_classifier_metastasis_en.md
* Update 2024-08-09-generic_logreg_classifier_metastasis_en.md
* Update 2024-08-09-generic_classifier_metastasis_en.md
* Update 2024-08-09-classifierdl_metastasis_en.md
* Update 2024-08-09-classifierdl_metastasis_en.md
* Update 2024-08-09-generic_classifier_metastasis_en.md
* Update 2024-08-09-classifierdl_metastasis_en.md
* Update 2024-08-09-generic_logreg_classifier_metastasis_en.md
* Update 2024-08-09-generic_svm_classifier_metastasis_en.md
* Update 2024-08-09-generic_classifier_metastasis_en.md
* 2024-08-12-large_fewshot_classifier_ade_en (#1372)
* Add model 2024-08-12-large_fewshot_classifier_ade_en
* Update 2024-08-12-large_fewshot_classifier_ade_en.md
Fixed Benchmarking Section
* Update 2024-08-12-large_fewshot_classifier_ade_en.md
Updated the view
* Update 2024-08-12-large_fewshot_classifier_ade_en.md
---------
Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>
Co-authored-by: Cabir C. <64752006+Cabir40@users.noreply.github.com>
* 2024-08-13-generic_classifier_oncology_en (#1374)
* 2024-08-16-ner_cancer_types_wip_en (#1390)
* Update 2024-08-16-ner_cancer_types_wip_en.md
* Update 2024-08-16-ner_cancer_types_wip_en.md
* 2024-08-14-sbiobertresolve_rxnorm_augmented_v2_en (#1384)
* 2024-08-20-biolordresolve_avg_rxnorm_augmented_v2_en (#1397)
* 2024-08-19-sbiobertresolve_icd10cm_augmented_en (#1396)
* Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_en
* Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en
* Add model 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en
* Add model 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en
* Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md
typo fixed
* Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md
* Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md
typo fixed
* Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md
typo fixed
* Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md
* Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md
* Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md
* Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md
---------
Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-08-15-url_matcher_en (#1387)
* Add model 2024-08-15-url_matcher_en
* Update 2024-08-15-url_matcher_en.md
* Add model 2024-08-15-email_matcher_en
* Add model 2024-08-19-ip_matcher_en
---------
Co-authored-by: yigitgull <yigit1gul@gmail.com>
Co-authored-by: Yigit <110747690+yigitgull@users.noreply.github.com>
* 2024-08-20-ner_stigmatization_wip_en (#1398)
* 2024-08-21-url_matcher_en (#1400)
* Add model 2024-08-21-url_matcher_en
* Add model 2024-08-21-ip_matcher_en
* Add model 2024-08-21-email_matcher_en
---------
Co-authored-by: yigitgull <yigit1gul@gmail.com>
* Revert "2024-08-15-url_matcher_en (#1387)" (#1401)
This reverts commit 7e81a6e7bf3686a8ab03db4bae47c1b15c046a4f.
* 2024-08-15-large_fewshot_classifier_age_group_en (#1388)
* Add model 2024-08-15-large_fewshot_classifier_age_group_en
* Update 2024-08-15-large_fewshot_classifier_age_group_en.md
Fixed python code block view
* Update 2024-08-15-large_fewshot_classifier_age_group_en.md
Fixed the code snippet
---------
Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>
* 2024-08-21-sbiobertresolve_icd10cm_slim_billable_hcc_en (#1404)
* 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en (#1410)
* Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en
* Add model 2024-08-22-rxnorm_resolver_pipeline_en
* Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md
* Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md
* Add model 2024-08-22-medication_resolver_pipeline_en
* Update 2024-08-22-medication_resolver_pipeline_en.md
* Update 2024-08-22-rxnorm_resolver_pipeline_en.md
* Add model 2024-08-22-icd10cm_resolver_pipeline_en
* Update 2024-08-22-icd10cm_resolver_pipeline_en.md
* Add model 2024-08-22-medication_resolver_transform_pipeline_en
* Update 2024-08-22-medication_resolver_transform_pipeline_en.md
* Update 2024-08-22-rxnorm_resolver_pipeline_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: bugra <93034133+bugeki@users.noreply.github.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>
* 2024-08-22-rxnorm_resolver_pipeline_en (#1411)
* Add model 2024-08-22-rxnorm_resolver_pipeline_en
* Add model 2024-08-22-medication_resolver_transform_pipeline_en
* Add model 2024-08-22-icd10cm_resolver_pipeline_en
* Add model 2024-08-22-medication_resolver_pipeline_en
* Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en
* Update 2024-08-22-icd10cm_resolver_pipeline_en.md
* Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md
* Update 2024-08-22-medication_resolver_pipeline_en.md
* Update 2024-08-22-medication_resolver_transform_pipeline_en.md
* Update 2024-08-22-rxnorm_resolver_pipeline_en.md
* Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: bugra <93034133+bugeki@users.noreply.github.com>
* 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en (#1409)
* Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en
* Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md
* Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md
* Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md
* Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md
* Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_en
* Update 2024-08-22-sbiobertresolve_icd10cm_augmented_en.md
* Add model 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en
* Update 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en.md
* Add model 2024-08-22-icd10cm_resolver_pipeline_en
* Update 2024-08-22-icd10cm_resolver_pipeline_en.md
* Add model 2024-08-22-medication_resolver_transform_pipeline_en
* Add model 2024-08-22-rxnorm_resolver_pipeline_en
* Add model 2024-08-22-medication_resolver_pipeline_en
* Update 2024-08-22-medication_resolver_pipeline_en.md
* Update 2024-08-22-medication_resolver_transform_pipeline_en.md
* Update 2024-08-22-rxnorm_resolver_pipeline_en.md
* Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en
* Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md
---------
Co-authored-by: bugeki <bugra@johnsnowlabs.com>
Co-authored-by: bugra <93034133+bugeki@users.noreply.github.com>
* 2024-08-27-ner_stigmatization_wip_en (#1419)
* Add model 2024-08-27-ner_stigmatization_wip_en
* Update 2024-08-27-ner_stigmatization_wip_en.md
* Update 2024-08-27-ner_stigmatization_wip_en.md
* Update 2024-08-27-ner_stigmatization_wip_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* Add model 2024-08-27-dicom_died_pipeline_en (#1424)
Co-authored-by: kolia1985 <kolia1985@gmail.com>
* 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en (#1437)
* Add model 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en
* Update 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en.md
* Add model 2024-09-05-ner_ade_clinical_v2_en
* Update 2024-09-05-ner_ade_clinical_v2_en.md
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Vildan <64216738+Meryem1425@users.noreply.github.com>
* 2024-08-29-biolord_icd10cm_augmented_billable_hcc_en (#1429)
* Update 2024-09-02-sbiobertresolve_meddra_lowest_level_term_en.md
* Update 2024-09-02-sbiobertresolve_meddra_preferred_term_en.md
* Update 2024-09-03-meddra_llt_pt_mapper_en.md
* Update 2024-09-03-meddra_pt_llt_mapper_en.md
* Update 2024-09-04-icd10_meddra_llt_mapper_en.md
* Update 2024-09-04-icd10_meddra_pt_mapper_en.md
* Update 2024-09-04-meddra_llt_icd10_mapper_en.md
* Update 2024-09-04-meddra_pt_icd10_mapper_en.md
* Update 2024-09-05-meddra_hlt_pt_mapper_en.md
* Update 2024-09-05-meddra_llt_snomed_mapper_en.md
* Update 2024-09-05-meddra_pt_hlt_mapper_en.md
* Update 2024-09-05-snomed_meddra_llt_mapper_en.md
* 2024-09-06-meddra_pt_resolver_pipeline_en (#1439)
* Update 2024-09-06-meddra_pt_resolver_pipeline_en.md
* Update 2024-09-06-meddra_llt_resolver_pipeline_en.md
* 2024-09-06-ner_deid_generic_docwise_en (#1440)
* 2024-09-09-country_matcher_en (#1443)
* Add model 2024-09-09-country_matcher_en
* Update 2024-09-09-country_matcher_en.md
Fixed python code block view
* Add model 2024-09-09-zip_parser_en
* Update 2024-09-09-zip_parser_en.md
Fixed python code block view
* Add model 2024-09-09-state_matcher_en
* Update 2024-09-09-state_matcher_en.md
Fixed python code block view
---------
Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>
* 2024-09-09-explain_clinical_doc_vop_small_en (#1446)
* 2024-09-09-explain_clinical_doc_cancer_type_en (#1444)
* 2024-09-09-explain_clinical_doc_cancer_type_en (#1447)
* Update 2024-09-09-explain_clinical_doc_vop_small_en.md
* Update 2024-09-09-explain_clinical_doc_vop_small_en.md
* Update 2024-09-09-explain_clinical_doc_vop_small_en.md
* Update 2024-09-09-explain_clinical_doc_vop_small_en.md
* Update 2024-09-09-explain_clinical_doc_vop_small_en.md
* Update 2024-09-09-explain_clinical_doc_vop_small_en.md
* 2024-09-11-state_matcher_en (#1458)
* Add model 2024-09-11-state_matcher_en
* Update 2024-09-11-state_matcher_en.md
FİXED CODE BLOCK VİEW
---------
Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>
* 2024-09-11-explain_clinical_doc_oncology_en (#1461)
* 2024-09-11-explain_clinical_doc_oncology_en (#1462)
* 2024-09-11-explain_clinical_doc_oncology_en (#1463)
* 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en (#1464)
* Add model 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en
* Update 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en.md
---------
Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C. <64752006+Cabir40@users.noreply.github.com>
* 2024-09-12-sbiobertresolve_ndc_en (#1466)
* Add model 2024-09-12-sbiobertresolve_ndc_en
* Update 2024-09-12-sbiobertresolve_ndc_en.md
typo fixed
---------
Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>
* 2024-09-12-biolordresolve_icd10cm_augmented_billable_hcc_en (#1468)
* removed md cart
* 2024-09-13-ndc_resolver_pipeline_en (#1473)
* Add model 2024-09-13-ndc_resolver_pipeline_en
* Update 2024-09-13-ndc_resolver_pipeline_en.md
---------
Co-authored-by: gpirge <gursev.pirge@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-09-13-ndc_resolver_pipeline_en (#1470)
* Add model 2024-09-13-ndc_resolver_pipeline_en
* Update 2024-09-13-ndc_resolver_pipeline_en.md
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-09-13-ndc_resolver_pipeline_en (#1469)
* Add model 2024-09-13-ndc_resolver_pipeline_en
* Update 2024-09-13-ndc_resolver_pipeline_en.md
* Update 2024-09-13-ndc_resolver_pipeline_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-09-16-oncology_biomarker_pipeline_en (#1478)
* Add model 2024-09-16-oncology_biomarker_pipeline_en
* Update 2024-09-16-oncology_biomarker_pipeline_en.md
* Add model 2024-09-16-explain_clinical_doc_cancer_type_en
* Update 2024-09-16-explain_clinical_doc_cancer_type_en.md
* Add model 2024-09-09-explain_clinical_doc_cancer_type_en
* Delete docs/_posts/Meryem1425/2024-09-09-explain_clinical_doc_cancer_type_en.md
This PP is the previous version of the cancer_type PP
* Delete docs/_posts/Meryem1425/2024-09-16-oncology_biomarker_pipeline_en.md
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Vildan <64216738+Meryem1425@users.noreply.github.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>
* 2024-09-16-oncology_biomarker_pipeline_en (#1479)
* Add model 2024-09-16-oncology_biomarker_pipeline_en
* Update 2024-09-16-oncology_biomarker_pipeline_en.md
* Add model 2024-09-16-explain_clinical_doc_cancer_type_en
* Update 2024-09-16-explain_clinical_doc_cancer_type_en.md
* Delete docs/_posts/bugeki/2024-09-16-oncology_biomarker_pipeline_en.md
---------
Co-authored-by: bugeki <bugra@johnsnowlabs.com>
Co-authored-by: bugra <93034133+bugeki@users.noreply.github.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
Co-authored-by: Vildan <64216738+Meryem1425@users.noreply.github.com>
* 2024-09-16-oncology_biomarker_pipeline_en (#1480)
* Add model 2024-09-16-oncology_biomarker_pipeline_en
* Update 2024-09-16-oncology_biomarker_pipeline_en.md
* Add model 2024-09-16-explain_clinical_doc_cancer_type_en
* Update 2024-09-16-explain_clinical_doc_cancer_type_en.md
* Delete docs/_posts/akrztrk/2024-09-16-oncology_biomarker_pipeline_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
Co-authored-by: Vildan <64216738+Meryem1425@users.noreply.github.com>
* deleted md cards
* 2024-09-17-oncology_biomarker_pipeline_en (#1487)
* 2024-09-17-oncology_biomarker_pipeline_en (#1486)
* 2024-09-17-oncology_biomarker_pipeline_en (#1485)
* 2024-09-20-ner_deid_subentity_augmented_v2_en (#1496)
* 2024-09-24-clinical_deidentification_v2_wip_en (#1501)
* Add model 2024-09-24-clinical_deidentification_v2_wip_en
* Update 2024-09-24-clinical_deidentification_v2_wip_en.md
* Add model 2024-09-25-clinical_deidentification_docwise_wip_en
* Update 2024-09-24-clinical_deidentification_v2_wip_en.md
* Update 2024-09-25-clinical_deidentification_docwise_wip_en.md
* Update 2024-09-25-clinical_deidentification_docwise_wip_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-09-25-ner_deid_aipii_en (#1503)
* Add model 2024-09-25-ner_deid_aipii_en
* Update 2024-09-25-ner_deid_aipii_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-09-27-clinical_deidentification_v2_wip_en (#1505)
* Add model 2024-09-27-clinical_deidentification_v2_wip_en
* Update 2024-09-27-clinical_deidentification_v2_wip_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-09-27-explain_clinical_doc_sdoh_small_en (#1507)
* Add model 2024-09-27-explain_clinical_doc_sdoh_small_en
* Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Vildan <64216738+Meryem1425@users.noreply.github.com>
* 2024-09-27-explain_clinical_doc_sdoh_small_en (#1506)
* Add model 2024-09-27-explain_clinical_doc_sdoh_small_en
* Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-09-27-explain_clinical_doc_sdoh_small_en (#1508)
* Add model 2024-09-27-explain_clinical_doc_sdoh_small_en
* Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md
---------
Co-authored-by: bugeki <bugra@johnsnowlabs.com>
Co-authored-by: bugra <93034133+bugeki@users.noreply.github.com>
* Add model 2024-09-29-email_matcher_en (#1512)
Co-authored-by: yigitgull <yigit1gul@gmail.com>
* 2024-09-30-clinical_deidentification_v2_wip_en (#1516)
* Add model 2024-10-01-jsl_medm_q8_v1_en (#1517)
Co-authored-by: akrztrk <akarozturk1@gmail.com>
* Add model 2024-10-01-jsl_meds_ner_q4_v2_en (#1518)
Co-authored-by: akrztrk <akarozturk1@gmail.com>
* 2024-10-02-icd10cm_chronic_indicator_mapper_en (#1519)
* Add model 2024-10-02-icd10cm_chronic_indicator_mapper_en
* Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md
* Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md
* Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md
* Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md
* Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md
---------
Co-authored-by: bugeki <bugra@johnsnowlabs.com>
Co-authored-by: bugra <93034133+bugeki@users.noreply.github.com>
* 2024-10-02-clinical_deidentification_nameAugmented_v2_en (#1520)
* Add model 2024-10-02-clinical_deidentification_nameAugmented_v2_en
* Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-10-02-clinical_deidentification_nameAugmented_v2_en (#1521)
* Add model 2024-10-02-clinical_deidentification_nameAugmented_v2_en
* Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md
* Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-10-03-clinical_deidentification_docwise_wip_en (#1522)
* Add model 2024-10-03-clinical_deidentification_docwise_wip_en
* Update 2024-10-03-clinical_deidentification_docwise_wip_en.md
* Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en
* Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md
* Add model 2024-10-03-clinical_deidentification_v2_wip_en
* Update 2024-10-03-clinical_deidentification_v2_wip_en.md
* Update 2024-10-03-clinical_deidentification_docwise_wip_en.md
* Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md
* Update 2024-10-03-clinical_deidentification_v2_wip_en.md
---------
Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-10-03-clinical_deidentification_docwise_wip_en (#1523)
* Add model 2024-10-03-clinical_deidentification_docwise_wip_en
* Update 2024-10-03-clinical_deidentification_docwise_wip_en.md
* Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en
* Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md
* Update 2024-10-03-clinical_deidentification_docwise_wip_en.md
* Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md
* Add model 2024-10-03-clinical_deidentification_v2_wip_en
* Update 2024-10-03-clinical_deidentification_v2_wip_en.md
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-10-03-clinical_deidentification_docwise_wip_en (#1524)
* Add model 2024-10-03-clinical_deidentification_docwise_wip_en
* Update 2024-10-03-clinical_deidentification_docwise_wip_en.md
* Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en
* Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md
* Update 2024-10-03-clinical_deidentification_docwise_wip_en.md
* Add model 2024-10-03-clinical_deidentification_v2_wip_en
* Update 2024-10-03-clinical_deidentification_v2_wip_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1527)
* 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1526)
* 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1525)
* 2024-10-04-jsl_medm_q4_v1_en (#1529)
* 2024-10-04-jsl_meds_ner_zs_q4_v1_en (#1530)
* 2024-10-07-clinical_deidentification_nameAugmented_v2_en (#1535)
* 2024-10-07-sbiobertresolve_loinc_augmented_en (#1536)
* 2024-10-08-jsl_medm_q16_v2_en (#1538)
* 2024-10-08-loinc_resolver_pipeline_en (#1540)
* Add model 2024-10-08-loinc_resolver_pipeline_en
* Update 2024-10-08-loinc_resolver_pipeline_en.md
* Update 2024-10-08-loinc_resolver_pipeline_en.md
* Add model 2024-10-08-loinc_numeric_resolver_pipeline_en
* Update 2024-10-08-loinc_numeric_resolver_pipeline_en.md
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-10-08-loinc_resolver_pipeline_en (#1539)
* 2024-10-14-explain_clinical_doc_oncology_en (#1547)
* 2024-10-14-explain_clinical_doc_oncology_en (#1548)
* 2024-10-14-explain_clinical_doc_oncology_en (#1549)
* 2024-10-17-ssn_parser_en (#1554)
* Add model 2024-10-17-ssn_parser_en
* Update 2024-10-17-ssn_parser_en.md
* Add model 2024-10-17-account_parser_en
* Update 2024-10-17-account_parser_en.md
* Add model 2024-10-18-dln_parser_en
* Update 2024-10-18-dln_parser_en.md
* Add model 2024-10-18-plate_parser_en
* Update 2024-10-18-plate_parser_en.md
* Add model 2024-10-18-vin_parser_en
* Update 2024-10-18-vin_parser_en.md
* Add model 2024-10-18-license_parser_en
* Update 2024-10-18-license_parser_en.md
* Add model 2024-10-18-age_parser_en
* Update 2024-10-18-age_parser_en.md
* Add model 2024-10-18-date_matcher_en
* Update 2024-10-18-date_matcher_en.md
* Add model 2024-10-18-phone_parser_en
* Update 2024-10-18-phone_parser_en.md
* Add model 2024-10-18-medical_record_parser_en
* Update 2024-10-18-medical_record_parser_en.md
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Vildan <64216738+Meryem1425@users.noreply.github.com>
* Add model 2024-10-18-country_matcher_en (#1555)
Co-authored-by: yigitgull <yigit1gul@gmail.com>
* Add model 2024-10-18-clinical_deidentification_docwise_wip_en (#1556)
Co-authored-by: Cabir40 <cabir4006@gmail.com>
* Add model 2024-10-18-clinical_deidentification_docwise_wip_en (#1557)
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
* Add model 2024-10-19-clinical_deidentification_docwise_wip_en (#1558)
Co-authored-by: Cabir40 <cabir4006@gmail.com>
* 2024-10-22-clinical_deidentification_docwise_wip_de (#1564)
* Add model 2024-10-22-clinical_deidentification_docwise_wip_de
* Update 2024-10-22-clinical_deidentification_docwise_wip_de.md
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Vildan <64216738+Meryem1425@users.noreply.github.com>
* 2024-10-15-jsl_medm_q16_v1_en (#1551)
* 2024-10-23-clinical_deidentification_v2_wip_en (#1568)
* 2024-10-23-clinical_deidentification_v2_wip_en (#1569)
* 2024-10-23-clinical_deidentification_v2_wip_en (#1570)
* 2024-10-24-clinical_deidentification_docwise_wip_de (#1572)
* 2024-10-24-clinical_deidentification_docwise_wip_de (#1571)
* Update 2024-10-22-clinical_deidentification_docwise_wip_de.md
* Update 2024-10-24-clinical_deidentification_docwise_wip_de.md
* Update 2024-10-24-clinical_deidentification_docwise_wip_de.md
* 2024-10-24-ner_deid_generic_docwise_de (#1573)
* 2024-11-04-clinical_deidentification_docwise_wip_de (#1580)
* Add model 2024-11-04-clinical_deidentification_docwise_wip_de
* Update 2024-11-04-clinical_deidentification_docwise_wip_de.md
* Update 2024-11-04-clinical_deidentification_docwise_wip_de.md
* Update 2024-11-04-clinical_deidentification_docwise_wip_de.md
* Update 2024-11-04-clinical_deidentification_docwise_wip_de.md
* Update 2024-11-04-clinical_deidentification_docwise_wip_de.md
---------
Co-authored-by: bugeki <bugra@johnsnowlabs.com>
Co-authored-by: bugra <93034133+bugeki@users.noreply.github.com>
* added new large model
* renamed MedMX
* 2024-11-04-clinical_deidentification_docwise_wip_de (#1582)
* Add model 2024-11-04-clinical_deidentification_docwise_wip_de
* Update 2024-11-04-clinical_deidentification_docwise_wip_de.md
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: bugra <93034133+bugeki@users.noreply.github.com>
* 2024-11-04-clinical_deidentification_docwise_wip_de (#1581)
* Add model 2024-11-04-clinical_deidentification_docwise_wip_de
* Update 2024-11-04-clinical_deidentification_docwise_wip_de.md
* Update 2024-11-04-clinical_deidentification_docwise_wip_de.md
* Add model 2024-11-04-clinical_deidentification_docwise_wip_de
* Update 2024-11-04-clinical_deidentification_docwise_wip_de.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: bugra <93034133+bugeki@users.noreply.github.com>
* 2024-11-06-clinical_deidentification_v2_wip_en (#1587)
* 2024-11-06-clinical_deidentification_v2_wip_en (#1586)
* 2024-11-06-clinical_deidentification_v2_wip_en (#1585)
* Add model 2024-11-10-contextual_assertion_family_en (#1590)
Co-authored-by: yigitgull <yigit1gul@gmail.com>
* 2024-11-12-drug_action_treatment_mapper_en (#1591)
* 2024-11-19-medembed_base_rxnorm_augmented_en (#1610)
* Add model 2024-11-19-medembed_base_rxnorm_augmented_en
* Update 2024-11-19-medembed_base_rxnorm_augmented_en.md
* Update 2024-11-19-medembed_base_rxnorm_augmented_en.md
* Add model 2024-11-19-medmebed_large_rxnorm_augmented_en
* Update 2024-11-19-medmebed_large_rxnorm_augmented_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en (#1622)
* Add model 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en
* Update 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en.md
---------
Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C. <64752006+Cabir40@users.noreply.github.com>
* Update 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en.md
* Update 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en.md
* Add model 2024-11-27-clinical_deidentification_docwise_wip_v2_en (#1626)
* 2024-11-28-ner_deid_generic_docwise_de (#1627)
* 2024-11-28-snomed_term_resolver_pipeline_en (#1628)
* 2024-11-28-date_matcher_en (#1629)
* Add model 2024-11-28-date_matcher_en
* Update 2024-11-28-date_matcher_en.md
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-11-27-zeroshot_ner_clinical_large_en (#1625)
* Add model 2024-11-27-zeroshot_ner_clinical_large_en
* Update 2024-11-27-zeroshot_ner_clinical_large_en.md
* Update 2024-11-27-zeroshot_ner_clinical_large_en.md
* Update 2024-11-27-zeroshot_ner_clinical_large_en.md
* Update 2024-11-27-zeroshot_ner_clinical_large_en.md
* Add model 2024-11-27-zeroshot_ner_clinical_medium_en
* Update 2024-11-27-zeroshot_ner_clinical_medium_en.md
* Update 2024-11-27-zeroshot_ner_clinical_large_en.md
* Update 2024-11-27-zeroshot_ner_clinical_medium_en.md
* Add model 2024-11-27-zeroshot_ner_oncology_medium_en
* Update 2024-11-27-zeroshot_ner_oncology_medium_en.md
* Add model 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en
* Add model 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en
* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md
* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md
* Update 2024-11-27-zeroshot_ner_oncology_medium_en.md
* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md
* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md
* Update 2024-11-27-zeroshot_ner_oncology_medium_en.md
* Update 2024-11-27-zeroshot_ner_oncology_medium_en.md
* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md
* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md
* Add model 2024-11-28-zeroshot_ner_oncology_large_en
* Update 2024-11-28-zeroshot_ner_oncology_large_en.md
* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md
* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
Co-authored-by: bugra <93034133+bugeki@users.noreply.github.com>
* Update 2024-11-28-zeroshot_ner_oncology_large_en.md
* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md
* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md
* Update 2024-11-27-zeroshot_ner_oncology_medium_en.md
* Update 2024-11-27-zeroshot_ner_clinical_medium_en.md
* Update 2024-11-27-zeroshot_ner_clinical_large_en.md
* 2024-11-28-zeroshot_ner_generic_medium_en (#1630)
* Add model 2024-11-28-zeroshot_ner_generic_medium_en
* Add model 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en
* Update 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en.md
* Add model 2024-11-28-zeroshot_ner_generic_large_en
* Add model 2024-11-29-clinical_deidentification_docwise_wip_en
* Update 2024-11-29-clinical_deidentification_docwise_wip_en.md
* Add model 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en
* Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md
* Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md
* Add model 2024-11-29-clinical_deidentification_v2_wip_en
* Update 2024-11-29-clinical_deidentification_v2_wip_en.md
* Update 2024-11-29-clinical_deidentification_docwise_wip_en.md
* Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md
* Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md
* Update 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en.md
* Update 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en.md
* Add model 2024-11-29-clinical_deidentification_docwise_wip_v2_en
* Update 2024-11-29-clinical_deidentification_docwise_wip_v2_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: bugra <93034133+bugeki@users.noreply.github.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
Co-authored-by: Cabir C. <64752006+Cabir40@users.noreply.github.com>
* 2024-11-29-clinical_deidentification_docwise_wip_en (#1631)
* Add model 2024-11-29-clinical_deidentification_docwise_wip_en
* Update 2024-11-29-clinical_deidentification_docwise_wip_en.md
* Add model 2024-11-29-clinical_deidentification_v2_wip_en
* Update 2024-11-29-clinical_deidentification_v2_wip_en.md
* Update 2024-11-29-clinical_deidentification_docwise_wip_en.md
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-11-29-clinical_deidentification_docwise_wip_en (#1632)
* Add model 2024-11-29-clinical_deidentification_docwise_wip_en
* Update 2024-11-29-clinical_deidentification_docwise_wip_en.md
* Add model 2024-11-29-clinical_deidentification_v2_wip_en
* Update 2024-11-29-clinical_deidentification_v2_wip_en.md
* Update 2024-11-29-clinical_deidentification_docwise_wip_en.md
* Add model 2024-11-29-clinical_deidentification_docwise_large_wip_de
* Add model 2024-11-29-clinical_deidentification_docwise_wip_de
* Update 2024-11-29-clinical_deidentification_docwise_wip_de.md
* Update 2024-11-29-clinical_deidentification_docwise_large_wip_de.md
---------
Co-authored-by: bugeki <bugra@johnsnowlabs.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
Co-authored-by: bugra <93034133+bugeki@users.noreply.github.com>
* 2024-11-29-clinical_deidentification_docwise_wip_v2_en (#1634)
* Add model 2024-11-29-clinical_deidentification_docwise_wip_v2_en
* Update 2024-11-29-clinical_deidentification_docwise_wip_v2_en.md
---------
Co-authored-by: bugeki <bugra@johnsnowlabs.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-11-29-clinical_deidentification_docwise_wip_v2_en (#1633)
* Add model 2024-11-29-clinical_deidentification_docwise_wip_v2_en
* Update 2024-11-29-clinical_deidentification_docwise_wip_v2_en.md
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-11-29-clinical_deidentification_docwise_wip_de (#1635)
* Add model 2024-11-29-clinical_deidentification_docwise_wip_de
* Add model 2024-11-29-clinical_deidentification_docwise_large_wip_de
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
* 2024-11-29-clinical_deidentification_docwise_large_wip_de (#1636)
* Add model 2024-11-29-clinical_deidentification_docwise_large_wip_de
* Add model 2024-11-29-clinical_deidentification_docwise_wip_de
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
* 2024-11-29-zeroshot_ner_vop_medium_en (#1637)
* Add model 2024-11-29-zeroshot_ner_vop_medium_en
* Update 2024-11-29-zeroshot_ner_vop_medium_en.md
* Add model 2024-11-30-zeroshot_ner_vop_large_en
* Update 2024-11-30-zeroshot_ner_vop_large_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-12-02-sbiobertresolve_umls_major_concepts_en (#1643)
* 2024-12-02-zeroshot_ner_ade_clinical_large_en (#1641)
* 2024-12-03-clinical_deidentification_docwise_medium_wip_en (#1646)
* 2024-12-03-clinical_deidentification_docwise_medium_wip_en (#1647)
* 2024-12-03-clinical_deidentification_docwise_medium_wip_en (#1649)
* 2024-12-04-ner_genes_phenotypes_wip_en (#1653)
* 2024-12-04-clinical_deidentification_zeroshot_large_en (#1656)
* 2024-12-04-clinical_deidentification_zeroshot_large_en (#1655)
* 2024-12-04-clinical_deidentification_zeroshot_large_en (#1654)
* 2024-12-05-sbiobertresolve_umls_drug_substance_en (#1657)
* 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en (#1667)
* Add model 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en
* Update 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en.md
* Add model 2024-12-13-zeroshot_ner_oncology_biomarker_large_en
* Update 2024-12-13-zeroshot_ner_oncology_biomarker_large_en.md
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2024-12-06-biolordresolve_umls_general_concepts_en (#1660)
* Add model 2024-12-06-biolordresolve_umls_general_concepts_en
* Update 2024-12-06-biolordresolve_umls_general_concepts_en.md
* Update 2024-12-06-biolordresolve_umls_general_concepts_en.md
* Add model 2024-12-06-umls_clinical_drugs_mapper_en
* Update 2024-12-06-umls_clinical_drugs_mapper_en.md
* Add model 2024-12-09-umls_icd10cm_mapper_en
* Update 2024-12-09-umls_icd10cm_mapper_en.md
* Add model 2024-12-10-icd10cm_umls_mapper_en
* Update 2024-12-10-icd10cm_umls_mapper_en.md
* Add model 2024-12-10-umls_cpt_mapper_en
* update scala code
* update scala code
* update scala code
* update scala code
* Update 2024-12-10-umls_cpt_mapper_en.md
* Update 2024-12-10-umls_cpt_mapper_en.md
* Update 2024-12-06-biolordresolve_umls_general_concepts_en.md
* Update 2024-12-06-umls_clinical_drugs_mapper_en.md
* Update 2024-12-09-umls_icd10cm_mapper_en.md
* Update 2024-12-10-icd10cm_umls_mapper_en.md
* Update 2024-12-10-umls_cpt_mapper_en.md
* Update 2024-12-10-umls_cpt_mapper_en.md
* Add model 2024-12-10-cpt_umls_mapper_en
* Update 2024-12-10-cpt_umls_mapper_en.md
* Add model 2024-12-11-umls_rxnorm_mapper_en
* Update 2024-12-11-umls_rxnorm_mapper_en.md
* Add model 2024-12-11-rxnorm_umls_mapper_en
* Update 2024-12-11-rxnorm_umls_mapper_en.md
* Add model 2024-12-11-umls_snomed_mapper_en
* Update 2024-12-11-umls_snomed_mapper_en.md
* Update 2024-12-11-umls_snomed_mapper_en.md
* Add model 2024-12-11-snomed_umls_mapper_en
* Update 2024-12-11-snomed_umls_mapper_en.md
* Update 2024-12-10-umls_cpt_mapper_en.md
* Add model 2024-12-11-umls_loinc_mapper_en
* Update 2024-12-11-umls_loinc_mapper_en.md
* Add model 2024-12-11-loinc_umls_mapper_en
* Update 2024-12-11-loinc_umls_mapper_en.md
* Add model 2024-12-12-umls_mesh_mapper_en
* Update 2024-12-12-umls_mesh_mapper_en.md
* Update 2024-12-11-loinc_umls_mapper_en.md
* Add model 2024-12-12-mesh_umls_mapper_en
* Update 2024-12-12-mesh_umls_mapper_en.md
* Add model 2024-12-16-umls_disease_syndrome_mapper_en
* Update 2024-12-16-umls_disease_syndrome_mapper_en.md
* Add model 2024-12-17-zeroshot_ner_deid_subentity_merged_large_en
* Add model 2024-12-18-umls_drug_substance_mapper_en
* Update 2024-12-18-umls_drug_substance_mapper_en.md
* Add model 2024-12-18-umls_clinical_findings_mapper_en
* Update 2024-12-18-umls_clinical_findings_mapper_en.md
* Add model 2024-12-18-umls_major_concepts_mapper_en
* Update 2024-12-18-umls_major_concepts_mapper_en.md
* Update 2024-12-12-umls_mesh_mapper_en.md
* Add model 2024-12-19-umls_loinc_mapper_en
* Update 2024-12-19-umls_loinc_mapper_en.md
* Delete docs/_posts/akrztrk/2024-12-11-umls_loinc_mapper_en.md
* Add model 2024-12-19-loinc_umls_mapper_en
* Update 2024-12-19-loinc_umls_mapper_en.md
* Delete docs/_posts/akrztrk/2024-12-11-loinc_umls_mapper_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* Update 2024-12-17-zeroshot_ner_deid_subentity_merged_large_en.md
* Update 2024-12-13-zeroshot_ner_oncology_biomarker_large_en.md
* Update 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en.md
* 2024-12-19-medication_resolver_transform_pipeline_en (#1671)
* 2024-12-19-medication_resolver_transform_pipeline_en (#1672)
* 2024-12-19-medication_resolver_transform_pipeline_en (#1673)
* 2025-01-01-zeroshot_ner_jsl_medium_en (#1680)
* Add model 2025-01-01-zeroshot_ner_jsl_medium_en
* Update 2025-01-01-zeroshot_ner_jsl_medium_en.md
* Add model 2025-01-01-zeroshot_ner_jsl_large_en
* Update 2025-01-01-zeroshot_ner_jsl_large_en.md
* Update 2025-01-01-zeroshot_ner_jsl_medium_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2025-01-03-clinical_deidentification_multi_mode_output_en (#1681)
* Add model 2025-01-03-clinical_deidentification_multi_mode_output_en
* Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md
* Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md
* Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md
* Add model 2025-01-06-clinical_deidentification_light_en
* Update 2025-01-06-clinical_deidentification_light_en.md
---------
Co-authored-by: akrztrk <akarozturk1@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2025-01-03-clinical_deidentification_multi_mode_output_en (#1682)
* Add model 2025-01-03-clinical_deidentification_multi_mode_output_en
* Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md
* Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md
* Add model 2025-01-06-clinical_deidentification_light_en
* Update 2025-01-06-clinical_deidentification_light_en.md
---------
Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2025-01-03-clinical_deidentification_multi_mode_output_en (#1683)
* Add model 2025-01-03-clinical_deidentification_multi_mode_output_en
* Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md
* Add model 2025-01-06-clinical_deidentification_light_en
* Update 2025-01-06-clinical_deidentification_light_en.md
* Add model 2025-01-06-zeroshot_ner_sdoh_medium_en
* Update 2025-01-06-zeroshot_ner_sdoh_medium_en.md
* Add model 2025-01-07-zeroshot_ner_sdoh_large_en
* Update 2025-01-07-zeroshot_ner_sdoh_large_en.md
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
Co-authored-by: Vildan <64216738+Meryem1425@users.noreply.github.com>
* 2025-01-11-ner_genes_phenotypes_en (#1684)
* Add model 2025-01-11-ner_genes_phenotypes_en
* Update 2025-01-11-ner_genes_phenotypes_en.md
* Update 2025-01-11-ner_genes_phenotypes_en.md
---------
Co-authored-by: gpirge <gursev.pirge@gmail.com>
Co-authored-by: gursev.pirge <67619330+gpirge@users.noreply.github.com>
Co-authored-by: Akar <67700732+akrztrk@users.noreply.github.com>
* 2025-01-13-ner_cancer_types_en (#1686)
* 2025-01-14-sbiobertresolve_HPO_en (#1687)
* Add model 2025-01-14-sbiobertresolve_HPO_en
* Update 2025-01-14-sbiobertresolve_HPO_en.md
* Update 2025-01-14-sbiobertresolve_HPO_en.md
* Update 2025-01-14-sbiobertresolve_HPO_en.md
* Update 2025-01-14-sbiobertresolve_HPO_en.md
* Add model 2025-01-15-ner_oncology_biomarker_docwise_en
* Update 2025-01-15-ner_oncology_biomarker_docwise_en.md
* Update 2025-01-15-ner_oncology_biomarker_docwise_en.md
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Vildan <64216738+Meryem1425@users.noreply.github.com>
* 2025-01-16-clinical_deidentification_docwise_benchmark_en (#1691)
* 2025-01-16-clinical_deidentification_docwise_benchmark_en (#1692)
* 2025-01-16-clinical_deidentification_docwise_benchmark_en (#1693)
* 2025-01-16-assertion_genomic_abnormality_wip_en (#1690)
* Add model 2025-01-16-assertion_genomic_abnormality_wip_en
* Update 2025-01-16-assertion_genomic_abnormality_wip_en.md
---------
Co-authored-by: gpirge <gursev.pirge@gmail.com>
Co-authored-by: gursev.pirge <67619330+gpirge@users.noreply.github.com>
* 2025-01-24-clinical_deidentification_docwise_benchmark_en (#1700)
* 2025-01-24-clinical_deidentification_docwise_benchmark_en (#1701)
* 2025-01-24-clinical_deidentification_docwise_benchmark_en (#1702)
* Add model 2025-02-03-AssertionBertForSequence_i2b2_3label_en (#1709)
Co-authored-by: Cabir40 <cabir4006@gmail.com>
* Update 2025-02-03-AssertionBertForSequence_i2b2_3label_en.md
* Add model 2025-02-06-explain_clinical_doc_oncology_slim_en (#1711)
* Update 2025-02-06-explain_clinical_doc_oncology_slim_en.md
* 2025-02-06-explain_clinical_doc_oncology_slim_en (#1712)
* Add model 2025-02-06-explain_clinical_doc_oncology_slim_en
* Update 2025-02-06-explain_clinical_doc_oncology_slim_en.md
---------
Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>
* 2025-02-06-explain_clinical_doc_oncology_slim_en (#1713)
* Add model 2025-02-06-explain_clinical_doc_oncology_slim_en
* Update 2025-02-06-explain_clinical_doc_oncology_slim_en.md
---------
Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>
* Add model 2025-02-13-assertion_bert_classifier_jsl_slim_en (#1715)
Co-authored-by: mehmetbutgul <mehmetbutgulmail@gmail.com>
* Add model 2025-02-14-biolordresolve_snomed_augmented_es (#1716)
* Update 2025-02-14-biolordresolve_snomed_augmented_es.md
JSL library version of python script is added.
* 2025-02-19-sbiobertresolve_mesh_augmented_en (#1718)
* Add model 2025-02-19-sbiobertresolve_mesh_augmented_en
* Add model 2025-02-19-sbiobertresolve_mesh_veterinary_en
* Add model 2025-02-19-sbiobertresolve_mesh_en
* Update 2025-02-19-sbiobertresolve_mesh_augmented_en.md
* Update 2025-02-19-sbiobertresolve_mesh_augmented_en.md
* Update 2025-02-19-sbiobertresolve_mesh_augmented_en.md
* Update 2025-02-19-sbiobertresolve_mesh_en.md
* Update 2025-02-19-sbiobertresolve_mesh_en.md
* Update 2025-02-19-sbiobertresolve_mesh_veterinary_en.md
* Update 2025-02-19-sbiobertresolve_mesh_veterinary_en.md
---------
Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>
* 2025-02-28-ner_oncology_wip_de (#1727)
* 2025-03-08-assertion_bert_classification_oncology_en (#1730)
* 2025-03-13-clinical_deidentification_nameAugmented_v3_en (#1734)
* 2025-03-13-clinical_deidentification_nameAugmented_v3_en (#1735)
* 2025-03-13-clinical_deidentification_nameAugmented_v3_en (#1737)
* 2025-03-11-clinical_deidentification_subentity_enriched_ar (#1731)
* Update 2025-02-28-ner_oncology_wip_de.md
* Update 2025-02-28-biolordresolve_icd10gm_augmented_de.md
* Add model 2025-03-18-clinical_deidentification_docwise_wip_en (#1740)
Co-authored-by: Cabir40 <cabir4006@gmail.com>
* 2025-03-12-contextual_assertion_possible_en (#1732)
* 2025-03-18-clinical_deidentification_docwise_wip_en (#1742)
* Add model 2025-03-18-clinical_deidentification_docwise_wip_en
* Update 2025-03-18-clinical_deidentification_docwise_wip_en.md
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>
* 2025-03-18-clinical_deidentification_docwise_wip_en (#1741)
* Add model 2025-03-18-clinical_deidentification_docwise_wip_en
* Update 2025-03-18-clinical_deidentification_docwise_wip_en.md
---------
Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>
* Add model 2025-03-24-ner_deid_subentity_docwise_augmented_pipeline_v2_en (#1747)
Co-authored-by: Cabir40 <cabir4006@gmail.com>
* 2025-03-24-ner_deid_nameAugmented_docwise_pipeline_en (#1748)
* Add model 2025-03-24-ner_deid_nameAugmented_docwise_pipeline_en
* Update 2025-03-24-ner_deid_nameAugmented_docwise_pipeline_en.md
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Vildan <64216738+Meryem1425@users.noreply.github.com>
* 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en (#1749)
* Add model 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en
* Update 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en.md
* Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en
* Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md
---------
Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Vildan <64216738+Meryem1425@users.noreply.github.com>
* 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en (#1750)
* Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en
* Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md
---------
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Vildan <64216738+Meryem1425@users.noreply.github.com>
* 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en (#1751)
* Add model 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en
* Update 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en.md
* Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en
* Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md
* Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en
* Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md
---------
Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Vildan <64216738+Meryem1425@users.noreply.github.com>
* 2025-03-27-ner_admission_discharge_benchmark_pipeline_en (#1755)
* Add model 2025-03-27-ner_admission_discharge_benchmark_pipeline_en
* added benchmark
* Add model 2025-03-27-ner_body_part_benchmark_pipeline_en
* Update 2025-03-27-ner_body_part_benchmark_pipeline_en.md
* Add model 2025-03-27-ner_treatment_benchmark_pipeline_en
* Add model 2025-03-27-ner_procedure_benchmark_pipeline_en
* Add model 2025-03-27-ner_alcohol_use_benchmark_pipeline_en
* Add model 2025-03-28-ner_substance_use_benchmark_pipeline_en
* Add model 2025-03-28-ner_consumption_benchmark_pipeline_en
* Add model 2025-03-28-ner_tobaco_use_benchmark_pipeline_en
* Add model 2025-03-28-ner_grade_stage_severity_benchmark_pipeline_en
* Add model 2025-03-28-ner_problem_benchmark_pipeline_en
* Add model 2025-03-27-ner_drug_benchmark_pipeline_en
* Add model 2025-03-27-ner_test_benchmark_pipeline_en
* modelcards fixed
* Add model 2025-03-28-ner_symptom_or_sign_benchmark_pipeline_en
* Add model 2025-03-28-ner_medical_condition_disorder_benchmark_pipeline_en
---------
Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C. <64752006+Cabir40@users.noreply.github.com>
* Update 2025-03-28-ner_symptom_or_sign_benchmark_pipeline_en.md
* 2025-04-04-assertion_bert_classification_clinical_en (#1764)
* Add model 2025-04-09-clinical_deidentification_docwise_benchmark_en (#1769)
* Add model 2025-04-10-clinical_deidentification_docwise_benchmark_en (#1770)
* 2025-04-28-assertion_bert_classification_jsl_en (#1779)
* 2025-05-01-hpo_matcher_en (#1784)
* Add model 2025-05-01-hpo_matcher_en
* Add model 2025-05-01-hpo_mapper_en
* Update 2025-05-01-hpo_mapper_en.md
* Update 2025-05-01-hpo_matcher_en.md
* Update 2025-05-01-hpo_mapper_en.md
---------
Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>
* 2025-05-02-stopwords_removal_hpo_en (#1785)
* Add model 2025-05-02-stopwords_removal_hpo_en
* Update 2025-05-02-stopwords_removal_hpo_en.md
---------
Co-authored-by: mehmetbutgul <mehmetbutgulmail@gmail.com>
Co-authored-by: Mehmet Butgul <109360261+mehmetbutgul@users.noreply.github.com>
* 2025-05-02-hpo_mapper_pipeline_en (#1786)
* Add model 2025-05-02-hpo_mapper_pipeline_en
* Update 2025-05-02-hpo_mapper_pipeline_en.md
---------
Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>
* 2025-05-02-hpo_mapper_pipeline_en (#1788)
* Add model 2025-05-02-hpo_mapper_pipeline_en
* Update 2025-05-02-hpo_mapper_pipeline_en.md
---------
Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>
* 2025-05-02-hpo_mapper_pipeline_en (#1787)
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