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Put back new CI files
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‎.github/workflows/CompatHelper.yml

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on:
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schedule:
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- cron: 0 0 * * *
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workflow_dispatch:
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permissions:
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contents: write
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pull-requests: write
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jobs:
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CompatHelper:
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runs-on: ubuntu-latest
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steps:
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- name: Check if Julia is already available in the PATH
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id: julia_in_path
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run: which julia
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continue-on-error: true
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- name: Install Julia, but only if it is not already available in the PATH
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uses: julia-actions/setup-julia@v1
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with:
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version: "1"
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arch: ${{ runner.arch }}
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if: steps.julia_in_path.outcome != 'success'
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- name: "Add the General registry via Git"
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run: |
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import Pkg
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ENV["JULIA_PKG_SERVER"] = ""
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Pkg.Registry.add("General")
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shell: julia --color=yes {0}
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- name: "Install CompatHelper"
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run: |
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import Pkg
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name = "CompatHelper"
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uuid = "aa819f21-2bde-4658-8897-bab36330d9b7"
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version = "3"
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Pkg.add(; name, uuid, version)
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shell: julia --color=yes {0}
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- name: "Run CompatHelper"
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run: |
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import CompatHelper
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CompatHelper.main()
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shell: julia --color=yes {0}
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}

‎.github/workflows/SpellCheck.yml

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name: Spell Check
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on: [pull_request]
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jobs:
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typos-check:
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name: Spell Check with Typos
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runs-on: ubuntu-latest
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steps:
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- name: Checkout Actions Repository
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uses: actions/checkout@v4
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- name: Check spelling
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uses: crate-ci/typos@v1.18.0

‎.github/workflows/TagBot.yml

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name: TagBot
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on:
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issue_comment:
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types:
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- created
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workflow_dispatch:
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inputs:
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lookback:
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default: "3"
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permissions:
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actions: read
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checks: read
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contents: write
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deployments: read
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issues: read
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discussions: read
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packages: read
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pages: read
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pull-requests: read
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repository-projects: read
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security-events: read
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statuses: read
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jobs:
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TagBot:
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if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'
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runs-on: ubuntu-latest
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steps:
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- uses: JuliaRegistries/TagBot@v1
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with:
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token: ${{ secrets.GITHUB_TOKEN }}
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ssh: ${{ secrets.DOCUMENTER_KEY }}

‎.github/workflows/ci.yml

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name: CI
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on:
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pull_request:
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branches:
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- main
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- dev
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paths-ignore:
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- "docs/**"
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push:
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branches:
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- main
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paths-ignore:
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- "docs/**"
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jobs:
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formatter:
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runs-on: ${{ matrix.os }}
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strategy:
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matrix:
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julia-version: [1]
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julia-arch: [x86]
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os: [ubuntu-latest]
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steps:
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- uses: julia-actions/setup-julia@latest
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with:
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version: ${{ matrix.julia-version }}
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- uses: actions/checkout@v4
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- name: Install JuliaFormatter and format
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# This will use the latest version by default but you can set the version like so:
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#
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# julia -e 'using Pkg; Pkg.add(PackageSpec(name="JuliaFormatter", version="0.13.0"))'
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run: |
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julia -e 'using Pkg; Pkg.add(PackageSpec(name="JuliaFormatter", version="1.0.50"))'
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julia -e 'using JuliaFormatter; format(".", verbose=true)'
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- name: Format check
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run: |
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julia -e '
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out = Cmd(`git diff`) |> read |> String
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if out == ""
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exit(0)
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else
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@error "Some files have not been formatted !!!"
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write(stdout, out)
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exit(1)
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end'
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test:
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name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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version:
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- "1.8"
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- "1" # automatically expands to the latest stable 1.x release of Julia
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- nightly
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os:
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- ubuntu-latest
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arch:
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- x64
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- x86
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include:
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# test macOS and Windows with latest Julia only
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- os: macOS-latest
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arch: x64
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version: 1
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- os: windows-latest
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arch: x64
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version: 1
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- os: windows-latest
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arch: x86
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version: 1
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steps:
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- uses: actions/checkout@v4
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- uses: julia-actions/setup-julia@v1
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with:
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version: ${{ matrix.version }}
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arch: ${{ matrix.arch }}
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- uses: actions/cache@v4
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env:
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cache-name: cache-artifacts
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with:
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path: ~/.julia/artifacts
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key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
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restore-keys: |
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${{ runner.os }}-test-${{ env.cache-name }}-
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${{ runner.os }}-test-
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${{ runner.os }}-
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- uses: julia-actions/julia-buildpkg@v1
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- uses: julia-actions/julia-runtest@v1
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- uses: julia-actions/julia-processcoverage@v1
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- uses: codecov/codecov-action@v4
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with:
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file: lcov.info
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docs:
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name: Documentation
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- uses: julia-actions/setup-julia@v1
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with:
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version: "1"
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- run: |
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julia --project=docs -e '
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using Pkg
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Pkg.develop(PackageSpec(path=pwd()))
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Pkg.instantiate()'
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- run: |
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julia --project=docs -e '
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using Documenter: DocMeta, doctest
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using CompositionalNetworks
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DocMeta.setdocmeta!(CompositionalNetworks, :DocTestSetup, :(using CompositionalNetworks); recursive=true)
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doctest(CompositionalNetworks)'
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- run: julia --project=docs docs/make.jl
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}

‎.github/workflows/register.yml

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name: Register Package
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on:
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workflow_dispatch:
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inputs:
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version:
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description: Version to register or component to bump
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required: true
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jobs:
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register:
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runs-on: ubuntu-latest
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permissions:
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contents: write
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steps:
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- uses: julia-actions/RegisterAction@latest
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with:
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token: ${{ secrets.GITHUB_TOKEN }}

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