test fixes etc.

Author: IanButterworth

stdlib/CompilerSupportLibraries_jll/src/CompilerSupportLibraries_jll.jl

@@ -5,7 +5,7 @@
 baremodule CompilerSupportLibraries_jll
 using Base, Libdl, Base.BinaryPlatforms
 
-export libgfortran, libstdcxx, libgomp, libatomic, libgcc_s
+export libgfortran, libstdcxx, libgomp, libatomic, libgcc_s, libquadmath
 
 # These get calculated in __init__()
 const PATH = Ref("")

stdlib/GMP_jll/src/GMP_jll.jl

@@ -28,7 +28,11 @@ end
 
 const libgmp = LazyLibrary(_libgmp_path)
 
-_libgmpxx_dependencies = LazyLibrary[libgmp, libstdcxx, libgcc_s]
+if Sys.isapple()
+    _libgmpxx_dependencies = LazyLibrary[libgmp]
+else
+    _libgmpxx_dependencies = LazyLibrary[libgmp, libstdcxx, libgcc_s]
+end
 const libgmpxx = LazyLibrary(
     _libgmpxx_path,
     dependencies=_libgmpxx_dependencies,

stdlib/LibSSH2_jll/Project.toml

@@ -6,6 +6,7 @@ version = "1.11.3+1"
 OpenSSL_jll = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
 Libdl = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
 Artifacts = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
+Zlib_jll = "83775a58-1f1d-513f-b197-d71354ab007a"
 
 [compat]
 julia = "1.8"

stdlib/LibSSH2_jll/src/LibSSH2_jll.jl

@@ -3,7 +3,7 @@
 ## dummy stub for https://github.com/JuliaBinaryWrappers/LibSSH2_jll.jl
 
 baremodule LibSSH2_jll
-using Base, Libdl
+using Base, Libdl, Zlib_jll
 if !Sys.iswindows()
     # On Windows we use system SSL/crypto libraries
     using OpenSSL_jll
@@ -20,15 +20,15 @@ artifact_dir::String = ""
 libssh2_path::String = ""
 
 
-_libssh2_dependencies = LazyLibrary[]
 if Sys.iswindows()
     const _libssh2_path = BundledLazyLibraryPath("libssh2.dll")
+    _libssh2_dependencies = LazyLibrary[]
 elseif Sys.isapple()
     const _libssh2_path = BundledLazyLibraryPath("libssh2.1.dylib")
-    push!(_libssh2_dependencies, libcrypto)
+    _libssh2_dependencies = LazyLibrary[libz, libcrypto]
 else
     const _libssh2_path = BundledLazyLibraryPath("libssh2.so.1")
-    push!(_libssh2_dependencies, libcrypto)
+    _libssh2_dependencies = LazyLibrary[libcrypto]
 end
 
 const libssh2 = LazyLibrary(_libssh2_path, dependencies=_libssh2_dependencies)

stdlib/MPFR_jll/src/MPFR_jll.jl

@@ -14,8 +14,6 @@ const LIBPATH_list = String[]
 artifact_dir::String = ""
 libmpfr_path::String = ""
 
-_libmpfr_dependencies = LazyLibrary[libgmp, libgmpxx]
-
 if Sys.iswindows()
     const _libmpfr_path = BundledLazyLibraryPath("libmpfr-6.dll")
 elseif Sys.isapple()
@@ -24,6 +22,7 @@ else
     const _libmpfr_path = BundledLazyLibraryPath("libmpfr.so.6")
 end
 
+_libmpfr_dependencies = LazyLibrary[libgmp]
 const libmpfr = LazyLibrary(
     _libmpfr_path,
     dependencies=_libmpfr_dependencies,

stdlib/Manifest.toml

@@ -1,8 +1,8 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.12.0-DEV"
+julia_version = "1.13.0-DEV"
 manifest_format = "2.0"
-project_hash = "1cb1aede0b4f0a2f12806233b9f188a63d6acf04"
+project_hash = "9dd25f3dfe3d3b5ebc31553fdfd46b5716d5b1ca"
 
 [[deps.ArgTools]]
 uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
@@ -23,7 +23,7 @@ version = "1.11.0"
 [[deps.CompilerSupportLibraries_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
-version = "1.2.0+0"
+version = "1.3.0+1"
 
 [[deps.Dates]]
 deps = ["Printf"]
@@ -44,7 +44,7 @@ version = "1.11.0"
 [[deps.Downloads]]
 deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
 uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
-version = "1.6.0"
+version = "1.7.0"
 
 [[deps.FileWatching]]
 uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
@@ -56,7 +56,7 @@ uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
 version = "1.11.0"
 
 [[deps.GMP_jll]]
-deps = ["Artifacts", "Libdl"]
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
 uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d"
 version = "6.3.0+2"
 
@@ -73,7 +73,7 @@ version = "1.12.0"
 [[deps.LLD_jll]]
 deps = ["Artifacts", "Libdl", "Zlib_jll", "libLLVM_jll"]
 uuid = "d55e3150-da41-5e91-b323-ecfd1eec6109"
-version = "18.1.7+3"
+version = "20.1.2+0"
 
 [[deps.LLVMLibUnwind_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -106,7 +106,7 @@ uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5"
 version = "1.9.0+0"
 
 [[deps.LibSSH2_jll]]
-deps = ["Artifacts", "Libdl", "OpenSSL_jll"]
+deps = ["Artifacts", "Libdl", "OpenSSL_jll", "Zlib_jll"]
 uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
 version = "1.11.3+1"
 
@@ -116,7 +116,7 @@ uuid = "183b4373-6708-53ba-ad28-60e28bb38547"
 version = "2.0.1+20"
 
 [[deps.LibUnwind_jll]]
-deps = ["Artifacts", "Libdl"]
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl", "Zlib_jll"]
 uuid = "745a5e78-f969-53e9-954f-d19f2f74f4e3"
 version = "1.8.1+2"
 
@@ -127,7 +127,7 @@ version = "1.11.0"
 [[deps.LinearAlgebra]]
 deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"]
 uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
-version = "1.11.0"
+version = "1.12.0"
 
 [[deps.Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
@@ -149,7 +149,7 @@ version = "1.11.0"
 
 [[deps.MozillaCACerts_jll]]
 uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
-version = "2024.11.26"
+version = "2025.2.25"
 
 [[deps.NetworkOptions]]
 uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
@@ -158,7 +158,7 @@ version = "1.3.0"
 [[deps.OpenBLAS_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
 uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"
-version = "0.3.28+3"
+version = "0.3.29+0"
 
 [[deps.OpenLibm_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -178,7 +178,7 @@ version = "10.44.0+1"
 [[deps.Pkg]]
 deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"]
 uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
-version = "1.12.0"
+version = "1.13.0"
 weakdeps = ["REPL"]
 
     [deps.Pkg.extensions]
@@ -195,7 +195,7 @@ uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79"
 version = "1.11.0"
 
 [[deps.REPL]]
-deps = ["InteractiveUtils", "JuliaSyntaxHighlighting", "Markdown", "Sockets", "StyledStrings", "Unicode"]
+deps = ["FileWatching", "InteractiveUtils", "JuliaSyntaxHighlighting", "Markdown", "Sockets", "StyledStrings", "Unicode"]
 uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
 version = "1.11.0"
 
@@ -241,7 +241,7 @@ uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b"
 version = "1.11.0"
 
 [[deps.SuiteSparse_jll]]
-deps = ["Artifacts", "Libdl", "libblastrampoline_jll"]
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl", "libblastrampoline_jll"]
 uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c"
 version = "7.10.1+0"
 
@@ -280,9 +280,9 @@ uuid = "05ff407c-b0c1-5878-9df8-858cc2e60c36"
 version = "2.2.5+2"
 
 [[deps.libLLVM_jll]]
-deps = ["Artifacts", "Libdl"]
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl", "Zlib_jll"]
 uuid = "8f36deef-c2a5-5394-99ed-8e07531fb29a"
-version = "18.1.7+3"
+version = "20.1.2+0"
 
 [[deps.libblastrampoline_jll]]
 deps = ["Artifacts", "Libdl"]

stdlib/OpenBLAS_jll/src/OpenBLAS_jll.jl

@@ -28,7 +28,13 @@ elseif Sys.isapple()
 else
     const _libopenblas_path = BundledLazyLibraryPath(string("libopenblas", libsuffix, ".so"))
 end
-const libopenblas = LazyLibrary(_libopenblas_path, dependencies=[libgfortran])
+
+if Sys.isapple()
+    _libopenblas_dependencies = LazyLibrary[libquadmath, libgfortran]
+else
+    _libopenblas_dependencies = LazyLibrary[libgfortran]
+end
+const libopenblas = LazyLibrary(_libopenblas_path, dependencies=_libopenblas_dependencies)
 
 # Conform to LazyJLLWrappers API
 function eager_mode()

stdlib/SuiteSparse_jll/Project.toml

@@ -3,11 +3,13 @@ uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c"
 version = "7.10.1+0"
 
 [deps]
-libblastrampoline_jll = "8e850b90-86db-534c-a0d3-1478176c7d93"
-Libdl = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
 Artifacts = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
+CompilerSupportLibraries_jll = "e66e0078-7015-5450-92f7-15fbd957f2ae"
+Libdl = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
+libblastrampoline_jll = "8e850b90-86db-534c-a0d3-1478176c7d93"
 
 [compat]
+CompilerSupportLibraries_jll = "1.3.0"
 julia = "1.13"
 
 [extras]

stdlib/SuiteSparse_jll/src/SuiteSparse_jll.jl

@@ -2,7 +2,7 @@
 
 ## dummy stub for https://github.com/JuliaBinaryWrappers/SuiteSparse_jll.jl
 baremodule SuiteSparse_jll
-using Base, Libdl, libblastrampoline_jll
+using Base, Libdl, libblastrampoline_jll, CompilerSupportLibraries_jll
 
 export libamd, libbtf, libcamd, libccolamd, libcholmod, libcolamd, libklu, libldl, librbio, libspqr, libsuitesparseconfig, libumfpack
 
@@ -68,17 +68,15 @@ else
 end
 
 const libsuitesparseconfig = LazyLibrary(_libsuitesparseconfig_path)
+const libldl = LazyLibrary(_libldl_path)
+const libbtf = LazyLibrary(_libbtf_path)
 
 const libcolamd = LazyLibrary(_libcolamd_path; dependencies=LazyLibrary[libsuitesparseconfig])
 const libamd = LazyLibrary(_libamd_path; dependencies=LazyLibrary[libsuitesparseconfig])
 const libcamd = LazyLibrary(_libcamd_path; dependencies=LazyLibrary[libsuitesparseconfig])
 const libccolamd = LazyLibrary(_libccolamd_path; dependencies=LazyLibrary[libsuitesparseconfig])
-const libldl = LazyLibrary(_libldl_path; dependencies=LazyLibrary[libsuitesparseconfig])
 const librbio = LazyLibrary(_librbio_path; dependencies=LazyLibrary[libsuitesparseconfig])
 
-_libbtf_dependencies = LazyLibrary[libsuitesparseconfig, libamd, libcolamd]
-const libbtf = LazyLibrary(_libbtf_path; dependencies=_libbtf_dependencies)
-
 _libcholmod_dependencies = LazyLibrary[
     libsuitesparseconfig, libamd, libcamd, libccolamd, libcolamd, libblastrampoline, # libmetis, liblapack?
 ]
@@ -87,12 +85,15 @@ const libcholmod = LazyLibrary(_libcholmod_path; dependencies=_libcholmod_depend
 _libklu_dependencies = LazyLibrary[libsuitesparseconfig, libamd, libcolamd, libbtf]
 const libklu = LazyLibrary(_libklu_path; dependencies=_libklu_dependencies)
 
-_libspqr_dependencies = LazyLibrary[
-    libsuitesparseconfig, libcholmod, libamd, libcolamd, libblastrampoline, # liblapack?
-]
+if Sys.isapple()
+    _libspqr_dependencies = LazyLibrary[libsuitesparseconfig, libcholmod, libblastrampoline]
+else
+    _libspqr_dependencies = LazyLibrary[libstdcxx, libgcc_s, libsuitesparseconfig, libcholmod, libblastrampoline]
+end
+
 const libspqr = LazyLibrary(_libspqr_path; dependencies=_libspqr_dependencies)
 
-_libumfpack_dependencies = LazyLibrary[ libsuitesparseconfig, libamd, libcolamd, libcholmod, libblastrampoline]
+_libumfpack_dependencies = LazyLibrary[libsuitesparseconfig, libamd, libcholmod, libblastrampoline]
 const libumfpack = LazyLibrary(_libumfpack_path; dependencies=_libumfpack_dependencies)
 
 

stdlib/libLLVM_jll/src/libLLVM_jll.jl

@@ -15,8 +15,6 @@ const LIBPATH_list = String[]
 artifact_dir::String = ""
 libLLVM_path::String = ""
 
-_libLLVM_dependencies = LazyLibrary[libstdcxx, libgcc_s, libz]
-
 if Sys.iswindows()
     const _libLLVM_path = BundledLazyLibraryPath("$(Base.libllvm_name).dll")
 elseif Sys.isapple()
@@ -25,6 +23,12 @@ else
     const _libLLVM_path = BundledLazyLibraryPath("$(Base.libllvm_name).so")
 end
 
+if Sys.isapple()
+    _libLLVM_dependencies = LazyLibrary[libz]
+else
+    _libLLVM_dependencies = LazyLibrary[libstdcxx, libgcc_s, libz]
+end
+
 const libLLVM = LazyLibrary(
     _libLLVM_path,
     dependencies=_libLLVM_dependencies,