See the wiki for more info.
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Mission-Application-Executive (MAE): The main executable script. Depending on the current phase of flight, MAE will select the appropriate flight program for execution.
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Mission-Application-Library (MAL): A collection of flight programs to handle each phase of flight to and from Mars.
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Mission-Services-Library (MSL): A collection of utility routines made available to any Mission Application (create circularization node, execute next node, etc.)
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Globals: A database of system-adjustable parameters, dynamic real-time flight data, and universal constants.
How to run
Copy all *.ks files to <KSP_dir>/Ships/Script (no sub-directories allowed in here, only *.ks files).
If you are going to space today, type in the following at the kOS terminal:
run mae.