diff --git a/nextflow/src/org/labkey/nextflow/pipeline/NextFlowPipelineJob.java b/nextflow/src/org/labkey/nextflow/pipeline/NextFlowPipelineJob.java index 40455d8c..a09f7571 100644 --- a/nextflow/src/org/labkey/nextflow/pipeline/NextFlowPipelineJob.java +++ b/nextflow/src/org/labkey/nextflow/pipeline/NextFlowPipelineJob.java @@ -68,7 +68,7 @@ private static Path createConfig(Path configTemplate, Path parentDir, Path jobDi template = PageFlowUtil.getStreamContentsAsString(in); } - String webdavUrl = FileContentService.get().getWebDavUrl(parentDir, container, FileContentService.PathType.full); + String webdavUrl = FileContentService.get().getWebDavUrl(parentDir, container, FileContentService.PathType.full).toString(); webdavUrl = StringUtils.stripEnd(webdavUrl, "/"); String substitutedContent = template.replace("${quant_spectra_dir}", "quant_spectra_dir = '" + webdavUrl + "'");