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New ETL For Hansen and changed apha numeric to numeric for step names
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,106 @@ | ||
| <etl xmlns="http://labkey.org/etl/xml"> | ||
| <name>mfshToRandalData_update</name> | ||
| <description>imports the data from mfsh animal details on ONPRC</description> | ||
| <transforms> | ||
| <transform id="step1"> | ||
| <description>Define Hansen Study Animals 2022</description> | ||
| <source queryName="studyAnimals" schemaName="Randal_data"/> | ||
| <destination queryName="StudyDetails_RandalData" schemaName="Onprc_ehr" targetOption="truncate"/> | ||
| </transform> | ||
| <transform id="step2"> | ||
| <description>Export Query to File Share</description> | ||
| <source queryName="RandData_AnimalGroups" schemaName="onprc_ehr"/> | ||
| <destination dir="hansenFiles" fileBaseName="AnimalGroups-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/> | ||
| </transform> | ||
| <transform id="step3"> | ||
| <description>Export Query to File Share</description> | ||
| <source queryName="RandData_blood" schemaName="onprc_ehr"/> | ||
| <destination dir="hansenFiles" fileBaseName="BloodDetails-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/> | ||
| </transform> | ||
| <transform id="step4"> | ||
| <description>Export Query to File Share</description> | ||
| <source queryName="RandData_birth" schemaName="onprc_ehr"/> | ||
| <destination dir="hansenFiles" fileBaseName="BirthDetails-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/> | ||
| </transform> | ||
| <transform id="step5"> | ||
| <description>Export Query to File Share</description> | ||
| <source queryName="RandData_assignment" schemaName="onprc_ehr"/> | ||
| <destination dir="hansenFiles" fileBaseName="assignment-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/> | ||
| </transform> | ||
| <transform id="step6"> | ||
| <description>Export Query to File Share</description> | ||
| <source queryName="RandData_arrival" schemaName="onprc_ehr"/> | ||
| <destination dir="hansenFiles" fileBaseName="arrival-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/> | ||
| </transform> | ||
|
|
||
| <transform id="step7"> | ||
| <description>Export Query to File Share</description> | ||
| <source queryName="RandData_weights" schemaName="onprc_ehr"/> | ||
| <destination dir="hansenFiles" fileBaseName="weights-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/> | ||
| </transform> | ||
| <transform id="step8"> | ||
| <description>Export Query to File Share</description> | ||
| <source queryName="RandData_Cases" schemaName="onprc_ehr"/> | ||
| <destination dir="hansenFiles" fileBaseName="Cases-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/> | ||
| </transform> | ||
| <transform id="step9"> | ||
| <description>Export Query to File Share</description> | ||
| <source queryName="RandData_clinremarks" schemaName="onprc_ehr"/> | ||
| <destination dir="hansenFiles" fileBaseName="clinremarks-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/> | ||
| </transform> | ||
| <transform id="step10"> | ||
| <description>Export Query to File Share</description> | ||
| <source queryName="RandData_demographics" schemaName="onprc_ehr"/> | ||
| <destination dir="hansenFiles" fileBaseName="demographics-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/> | ||
| </transform> | ||
| <transform id="step11"> | ||
| <description>Export Query to File Share</description> | ||
| <source queryName="RandData_deaths" schemaName="onprc_ehr"/> | ||
| <destination dir="hansenFiles" fileBaseName="deaths-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/> | ||
| </transform> | ||
| <transform id="step12"> | ||
| <description>Export Query to File Share</description> | ||
| <source queryName="RandData_departure" schemaName="onprc_ehr"/> | ||
| <destination dir="hansenFiles" fileBaseName="departure-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/> | ||
| </transform> | ||
| <transform id="step13"> | ||
| <description>Export Query to File Share</description> | ||
| <source queryName="RandData_drug" schemaName="onprc_ehr"/> | ||
| <destination dir="hansenFiles" fileBaseName="drug-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/> | ||
| </transform> | ||
| <transform id="step14"> | ||
| <description>Export Query to File Share</description> | ||
| <source queryName="RandData_flags" schemaName="onprc_ehr"/> | ||
| <destination dir="hansenFiles" fileBaseName="flags-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/> | ||
| </transform> | ||
| <transform id="step15"> | ||
| <description>Export Query to File Share</description> | ||
| <source queryName="RandData_Hematology" schemaName="onprc_ehr"/> | ||
| <destination dir="hansenFiles" fileBaseName="Hematology-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/> | ||
| </transform> | ||
| <transform id="step16"> | ||
| <description>Export Query to File Share</description> | ||
| <source queryName="RandData_Housing" schemaName="onprc_ehr"/> | ||
| <destination dir="hansenFiles" fileBaseName="Housing-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/> | ||
| </transform> | ||
| <transform id="step17"> | ||
| <description>Export Query to File Share Project</description> | ||
| <source queryName="project" schemaName="pf_ehrData"/> | ||
| <destination dir="hansenFiles" fileBaseName="Projects-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/> | ||
| </transform> | ||
| <transform id="step18"> | ||
| <description>Export Query to File Share Protocols</description> | ||
| <source queryName="protocol" schemaName="pf_ehrData"/> | ||
| <destination dir="hansenFiles" fileBaseName="Protocol-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/> | ||
| </transform> | ||
| <transform id="step19"> | ||
| <description>Export Query to File Share</description> | ||
| <source queryName="RandalData_bcs" schemaName="onprc_ehr"/> | ||
| <destination dir="hansonFiles" fileBaseName="Notes-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/> | ||
| </transform> | ||
| </transforms> | ||
| <schedule> | ||
| <!--5AM--> | ||
| <cron expression="0 0 05 * * ?"/> | ||
| </schedule> | ||
| </etl> |