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add sphinx.configuration key for RTD #240

add sphinx.configuration key for RTD

add sphinx.configuration key for RTD #240

Triggered via push February 28, 2025 01:07
Status Cancelled
Total duration 3m 20s
Artifacts 3

gh-ci-cron.yaml

on: push
gen_matrix
4s
gen_matrix
env_config
2s
env_config
Matrix: mdakit-ci
process_results
9s
process_results
deploy_docs
32s
deploy_docs
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58 errors and 3 warnings
mdakit-ci (maicos, latest)
The process '/home/runner/miniconda3/condabin/mamba' failed with exit code 1
mdakit-ci (mdahole2, develop)
Process completed with exit code 1.
mdakit-ci (helanal, latest)
Process completed with exit code 1.
mdakit-ci (spyrmsdkit, latest)
Canceling since a higher priority waiting request for 'refs/heads/main--GH Actions Cron CI' exists
mdakit-ci (membrane-curvature, latest)
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mdakit-ci (membrane-curvature, develop)
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mdakit-ci (openmm-mdanalysis-reporter, latest)
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mdakit-ci (spyrmsdkit, develop)
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mdakit-ci (pathsimanalysis, develop)
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mdakit-ci (openmmdl, latest)
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mdakit-ci (openmmdl, develop)
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mdakit-ci (prolif, latest)
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mdakit-ci (openmm-mdanalysis-reporter, develop)
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mdakit-ci (pathsimanalysis, latest)
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mdakit-ci (prolif, develop)
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mdakit-ci (propkatraj, latest)
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mdakit-ci (propkatraj, develop)
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mdakit-ci (transport-analysis, develop)
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mdakit-ci (pytim, develop)
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mdakit-ci (solvation-analysis, develop)
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mdakit-ci (waterdynamics, develop)
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mdakit-ci (mdonatello, latest)
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mdakit-ci (zarrtraj, develop)
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mdakit-ci (mdonatello, develop)
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mdakit-ci (mdonatello, develop)
The operation was canceled.
mdakit-ci (transport-analysis, latest)
Canceling since a higher priority waiting request for 'refs/heads/main--GH Actions Cron CI' exists
mdakit-ci (waterdynamics, latest)
Canceling since a higher priority waiting request for 'refs/heads/main--GH Actions Cron CI' exists
mdakit-ci (pytim, latest)
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mdakit-ci (mda-tui, latest)
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mdakit-ci (mda-tui, latest)
The operation was canceled.
mdakit-ci (mdance, latest)
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mdakit-ci (mdance, latest)
The operation was canceled.
mdakit-ci (mdaencore, latest)
Canceling since a higher priority waiting request for 'refs/heads/main--GH Actions Cron CI' exists
mdakit-ci (mdaencore, latest)
The operation was canceled.
mdakit-ci (mda-tui, develop)
Canceling since a higher priority waiting request for 'refs/heads/main--GH Actions Cron CI' exists
mdakit-ci (mda-tui, develop)
The operation was canceled.
mdakit-ci (helanal, develop)
Canceling since a higher priority waiting request for 'refs/heads/main--GH Actions Cron CI' exists
mdakit-ci (lipyds, develop)
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mdakit-ci (lipidorderkit, latest)
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mdakit-ci (lipidorderkit, latest)
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mdakit-ci (mdakit-sasa, latest)
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mdakit-ci (mdakit-sasa, latest)
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mdakit-ci (mdaencore, develop)
Canceling since a higher priority waiting request for 'refs/heads/main--GH Actions Cron CI' exists
mdakit-ci (mdance, develop)
Canceling since a higher priority waiting request for 'refs/heads/main--GH Actions Cron CI' exists
mdakit-ci (mdachecker, develop)
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mdakit-ci (mdance, develop)
The operation was canceled.
mdakit-ci (domhmm, develop)
Canceling since a higher priority waiting request for 'refs/heads/main--GH Actions Cron CI' exists
mdakit-ci (mdacli, develop)
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mdakit-ci (lipidorderkit, develop)
Canceling since a higher priority waiting request for 'refs/heads/main--GH Actions Cron CI' exists
mdakit-ci (mdakit-sasa, develop)
Canceling since a higher priority waiting request for 'refs/heads/main--GH Actions Cron CI' exists
mdakit-ci (maicos, develop)
Canceling since a higher priority waiting request for 'refs/heads/main--GH Actions Cron CI' exists
mdakit-ci (domhmm, latest)
Canceling since a higher priority waiting request for 'refs/heads/main--GH Actions Cron CI' exists
mdakit-ci (domhmm, latest)
The operation was canceled.
mdakit-ci (mdacli, latest)
Canceling since a higher priority waiting request for 'refs/heads/main--GH Actions Cron CI' exists
mdakit-ci (mdacli, latest)
The operation was canceled.
process_results
Process completed with exit code 1.
mdakit-ci (maicos, latest)
error libmamba Error when extracting package: Could not chdir info/recipe/parent/build.sh
mdakit-ci (maicos, latest)
Found incorrect download: libgomp. Aborting
mdakit-ci (maicos, latest)
# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<< Traceback (most recent call last): File "/home/runner/miniconda3/lib/python3.12/site-packages/conda/exception_handler.py", line 18, in __call__ return func(*args, **kwargs) ^^^^^^^^^^^^^^^^^^^^^ File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 960, in exception_converter raise e File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 953, in exception_converter exit_code = _wrapped_main(*args, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 899, in _wrapped_main result = do_call(parsed_args, p) ^^^^^^^^^^^^^^^^^^^^^^^ File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 768, in do_call exit_code = create(args, parser) ^^^^^^^^^^^^^^^^^^^^ File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 603, in create return install(args, parser, "create") ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 559, in install transaction.fetch_extract_packages() RuntimeError: Found incorrect download: libgomp. Aborting `$ /home/runner/miniconda3/condabin/mamba create --name test python=3.12` environment variables: CIO_TEST=<not set> CONDA=/home/runner/miniconda3 CONDA_ROOT=/home/runner/miniconda3 CURL_CA_BUNDLE=<not set> DEPLOYMENT_BASEPATH=/opt/runner GITHUB_EVENT_PATH=/home/runner/work/_temp/_github_workflow/event.json GITHUB_PATH=/home/runner/work/_temp/_runner_file_commands/add_path_9b12ef6d-7d43- 4e14-8a9b-93f3415b5c24 LD_PRELOAD=<not set> PATH=/home/runner/miniconda3/condabin:/snap/bin:/home/runner/.local/bin:/op t/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendo r/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin :/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/ga mes:/snap/bin REQUESTS_CA_BUNDLE=<not set> SELENIUM_JAR_PATH=/usr/share/java/selenium-server.jar SSL_CERT_FILE=<not set> SWIFT_PATH=/usr/share/swift/usr/bin active environment : None user config file : /home/runner/.condarc populated config files : /home/runner/miniconda3/.condarc /home/runner/.condarc conda version : 24.11.3 conda-build version : not installed python version : 3.12.8.final.0 solver : libmamba (default) virtual packages : __archspec=1=zen2 __conda=24.11.3=0 __glibc=2.35=0 __linux=6.8.0=0 __unix=0=0 base environment : /home/runner/miniconda3 (writable) conda av data dir : /home/runner/miniconda3/etc/conda conda av metadata url : None channel URLs : https://conda.anaconda.org/conda-forge/linux-64 https://conda.anaconda.org/conda-forge/noarch https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /home/runner/conda_pkgs_dir envs directories : /home/runner/miniconda3/envs /home/runner/.conda/envs platform : linux-64 user-agent : conda/24.11.3 requests/2.32.3 CPython/3.12.8 Linux/6.8.0-1021-azure ubuntu/22.04.5 glibc/2.35 solver/libmamba conda-libmamba-solver/24.9.0 libm

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cron-statuses-lipyds-latest Expired
237 Bytes
cron-statuses-mdachecker-latest Expired
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cron-statuses-mdahole2-latest Expired
241 Bytes