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‎.doctrees/environment.pickle

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‎.doctrees/mdakits.doctree

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‎.doctrees/zarrtraj.doctree

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‎MDANCE.html

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‎PathSimAnalysis.html

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‎ProLIF.html

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‎_sources/mdakits.rst.txt

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- Lipids, Lipids order parameters, SCD, Lipid metrics, Lipid study
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- `lipidorderkit authors`_
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- |lipidorderkit_latest| |lipidorderkit_develop|
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* - :ref:`zarrtraj`
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- streaming, trajectory, zarr, h5md, hdf5, AWS S3 Buckets, Google Cloud Buckets, Azure Blob Storage, Azure Data Lake
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- `zarrtraj authors`_
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- |zarrtraj_latest| |zarrtraj_develop|
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* - :ref:`waterdynamics`
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- water, hydrogenbonds, MSD
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membrane-curvature
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mdachecker
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lipidorderkit
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zarrtraj
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waterdynamics
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openmm-mdanalysis-reporter
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:alt: lipidorderkit develop CI status
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:target: https://github.com/MDAnalysis/MDAKits/actions
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.. _`zarrtraj authors`:
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https://github.com/Becksteinlab/zarrtraj/blob/main/AUTHORS.md
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.. |zarrtraj_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
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:alt: zarrtraj develop CI status
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:target: https://github.com/MDAnalysis/MDAKits/actions
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.. |zarrtraj_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
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:alt: zarrtraj develop CI status
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:target: https://github.com/MDAnalysis/MDAKits/actions
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.. _`waterdynamics authors`:
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https://github.com/MDAnalysis/waterdynamics/blob/main/AUTHORS.md
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‎_sources/zarrtraj.rst.txt

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.. _zarrtraj:
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************************************************
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zarrtraj
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************************************************
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| 🖋️ **Authors**: `zarrtraj authors`_
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| 🏠 **Project home:** https://github.com/Becksteinlab/zarrtraj
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| 📖 **Documentation:** https://zarrtraj.readthedocs.io/en/latest/?badge=latest
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| ⚖️ **License:** GPL-3.0-or-later
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| 🔑 **Keywords:** streaming, trajectory, zarr, h5md, hdf5, AWS S3 Buckets, Google Cloud Buckets, Azure Blob Storage, Azure Data Lake
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| 🚀 **Development status:** Development Status :: 4 - Beta
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| 📜 **Changelog:** https://github.com/Becksteinlab/zarrtraj/blob/main/CHANGELOG.md
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| 📑 **Publications:**
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| * https://doi.org/10.25080/Majora-629e541a-00e
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| * https://doi.org/10.1002/jcc.21787
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| * https://doi.org/10.1016/j.cpc.2014.01.018
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| * https://doi.org/10.25080/majora-1b6fd038-005
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| 🧪 **Tests (latest):** |zarrtraj_latest|
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| 🧪 **Tests (develop):** |zarrtraj_develop|
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| **Description:**
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| *Zarrtraj is a kit that provides the ability to stream & analyze H5MD trajectories from cloud storage.*
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Installation instructions
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=========================
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The latest version of zarrtraj can be installed using the following:
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.. code-block:: bash
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mamba install -c conda-forge zarrtraj
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The source code of zarrtraj can be installed using the following:
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.. code-block:: bash
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pip install git+https://github.com/Becksteinlab/zarrtraj@main
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.. _`zarrtraj authors`:
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https://github.com/Becksteinlab/zarrtraj/blob/main/AUTHORS.md
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.. |zarrtraj_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
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:alt: zarrtraj develop CI status
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:target: https://github.com/MDAnalysis/MDAKits/actions
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.. |zarrtraj_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
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:alt: zarrtraj develop CI status
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:target: https://github.com/MDAnalysis/MDAKits/actions
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‎lipidorderkit.html

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<link rel="author" title="About these documents" href="about.html" />
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<link rel="index" title="Index" href="genindex.html" />
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<link rel="search" title="Search" href="search.html" />
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</div>
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<footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
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<a href="mdachecker.html" class="btn btn-neutral float-left" title="mdachecker" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
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‎lipyds.html

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